PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_BEDDDB1C4.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 193aa MW: 19991.5 Da PI: 11.0991 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.4 | 5.8e-09 | 122 | 144 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd C++ H++ Traes_3AS_BEDDDB1C4.2 122 VCNHFVRTGTCKFGDACRYFHPK 144 6********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.324 | 117 | 145 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-4 | 119 | 144 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-6 | 121 | 145 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 122 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 122 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
TLAKSLIANA AEARRCRRRR CRWASTTATT ATRSSRTPPP PAGATSRAPS TTAPAPSGTT 60 PSAAKVTSPS PPSSRPMTHS LEHLARPLPF LTLNLNPSSS AESHGGPSPL LQPDGAILGQ 120 GVCNHFVRTG TCKFGDACRY FHPKPHAVNP ALAPSGPVPG AMGQQSNFLG TQPNFVGYPA 180 VEGNSFSGDL FLA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-172 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154677.1 | 5e-56 | zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A453ELP0 | 9e-82 | A0A453ELP0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3AS_BEDDDB1C4.2 | 1e-135 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12617 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-08 | C3H family protein |
Publications ? help Back to Top | |||
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