PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_9594B1341.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 551aa    MW: 60393.9 Da    PI: 7.5617
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_9594B1341.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.4e-168703498
                           SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                           ++++ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e +v+v+r
  Traes_3AS_9594B1341.2  8 QEIISKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLMAGDAFVYL--RSETGEQRVGVRR 70
                           58999******************************************999..4477778999997 PP
2Auxin_resp97.91.5e-3296177183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++t+s+F v+Y+Pr s+s+++v+v+k+++a k+ ++vGmRf+m+fe ed++ +++ Gt+vg  dl+p +W++S+W+sLk
  Traes_3AS_9594B1341.2  96 ASHALKTNSIFVVYYRPRLSQSQYIVSVNKYLQASKTGFTVGMRFRMNFEAEDVPVKKFFGTIVGDGDLSP-QWSGSEWKSLK 177
                            789********************************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.73172IPR003340B3 DNA binding domain
SuperFamilySSF1019363.4E-19499IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-10470No hitNo description
Gene3DG3DSA:2.40.330.102.6E-20585IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-14770IPR003340B3 DNA binding domain
PfamPF065074.5E-2896177IPR010525Auxin response factor
PfamPF023093.3E-7432486IPR033389AUX/IAA domain
PROSITE profilePS5174523.355447527IPR000270PB1 domain
SuperFamilySSF542772.4E-9447520No hitNo description
Gene3DG3DSA:3.10.20.2405.7E-4449508No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MAMPTPTQEI ISKDLHGSEW RFKHIYRGQP RRHLLTTGWS TFVTSKKLMA GDAFVYLRSE  60
TGEQRVGVRR LVQKQSTMPA SVISSQSMHL GVLASASHAL KTNSIFVVYY RPRLSQSQYI  120
VSVNKYLQAS KTGFTVGMRF RMNFEAEDVP VKKFFGTIVG DGDLSPQWSG SEWKSLKVQW  180
DDSVAICNGP ERVSPWEIDS SDASSPAISA LLQSSAKNKR PRETNENFDL PSQEPTQEFW  240
LSGMTQQHER TYVGSSDPNR ISGYHQILWP SSEPAGYGAM SSSSVCQTPL GLGDGWPKDF  300
NPSSQGVSPT LSEITQKLNR VASSEGRTPP PWATALCGGY RAEEPTSKLS CNPTLPLPEQ  360
VAPYLPKVAE KAKEPGVVRL FGVNLMENTN NAAAPTAGNA SAGAGETSAR VAGSVEGSGQ  420
LSAFSKVTKV ANESPREIQS QQSNVGRNRV KVQMHGNAVG RAVDLASLDG YEGLTSELEQ  480
MFEIKDIKQN FKVAFTDNEG DTMKVGDDPW MEFCRMVRKI VIYPIEDDKN MDPRQTSVLA  540
AAPDPDPKAN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-811208155362Auxin response factor 1
4ldw_A6e-811208155362Auxin response factor 1
4ldw_B6e-811208155362Auxin response factor 1
4ldx_A7e-811208155362Auxin response factor 1
4ldx_B7e-811208155362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752620.0AK375262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181787.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A446NBL20.0A0A446NBL2_TRITD; Auxin response factor
STRINGTraes_3AS_9594B1341.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.27e-95auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]