PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_82DEC629B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 161aa MW: 17878.2 Da PI: 9.5247 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.2 | 5.5e-22 | 2 | 76 | 22 | 87 |
H.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 22 faeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ + Traes_3AS_82DEC629B.1 2 HAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSCSAY 76 56666665554444334458899***********************************************96543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-25 | 1 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0015 | 1 | 89 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.27E-18 | 1 | 71 | No hit | No description |
PROSITE profile | PS50863 | 12.167 | 1 | 90 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-20 | 2 | 76 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.62E-20 | 2 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
QHAEKHFPLK RTPETTTTTG KGVLLNFEDG EGKVWRFRYS YWNSSQSYVL TKGWSRFVRE 60 KGLGAGDSIV FSCSAYGQEK QFFIDCKKNK TMASCPADGG XXXXPPVAEA ANGEQVRVVR 120 LFGVDIAGEK RGRVAQAEQE LFKRQCVAHS QHSPALGAFV L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-33 | 1 | 99 | 34 | 130 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372082 | 1e-127 | AK372082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2146E06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201133.1 | 1e-104 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Refseq | XP_020201484.1 | 1e-104 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q0DXB1 | 4e-61 | Y2641_ORYSJ; B3 domain-containing protein Os02g0764100 | ||||
Swissprot | Q9AWS0 | 2e-60 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A3B6EDN4 | 1e-105 | A0A3B6EDN4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446N2Q9 | 1e-105 | A0A446N2Q9_TRITD; Uncharacterized protein | ||||
STRING | Traes_3AS_82DEC629B.1 | 1e-114 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 2e-36 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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