PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_74E386CE7.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 338aa MW: 37906.2 Da PI: 8.2028

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_74E386CE7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	67.5	3.7e-21	6	85	58	128
NAM 58 wyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +fF++ +k+y+tg+rk+r+ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Traes_3AS_74E386CE7.1 6 KHFFHRPSKAYTTGTRKRRKiqtecdvhKGETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 85 59***************75666664433778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.656	1	104	IPR003441	NAC domain
SuperFamily	SSF101941	7.98E-24	2	104	IPR003441	NAC domain
Pfam	PF02365	2.9E-7	7	85	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDGLSKHFFH RPSKAYTTGT RKRRKIQTEC DVHKGETRWH KTGKTRPVMA NGRQKGCKKI 60 LVLYTNFGKH RKPEKTNWVM HQYHLGDLEE EKEGELVVCK IFYQTQPRQC SWSASSDRGG 120 AGGAVAIAAA AAVTVQEQRM RDSGSGSSSS RDHEALSATS YPAGYAMAEA VEMQHLKHSG 180 DHFSFAPFRK SFEEVGIGGD QVTSDQLGRS EHQQHTGQEQ QPHRPDLATT AVPATAFLVS 240 RPTNPISATV PPPLQHTSVV LDHDQFHVPA IFLHHDKFQN MQQQQQHQQK IDRRSAGLEE 300 LVMGCTSTCT KGETSIPHSQ ETEWPYPYWP PDNQDHHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190511.1	0.0	uncharacterized protein LOC109776267 isoform X1
Swissprot	Q9M0F8	9e-89	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2P0YPC6	0.0	A0A2P0YPC6_WHEAT; NAC domain-containing protein 24
TrEMBL	A0A3B6EBX1	0.0	A0A3B6EBX1_WHEAT; Uncharacterized protein
STRING	Traes_3AS_74E386CE7.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	4e-56	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]