PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_6DA07CB6A.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 504aa MW: 57149.7 Da PI: 6.6955

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_6DA07CB6A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.2	5e-07	222	243	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ff r G C +G++C+F+H+ Traes_3AS_6DA07CB6A.1 222 EMCVFFIR-GSCTRGNTCPFSHS 243 67999999.*************8 PP
2	zf-CCCH	20.8	6.7e-07	249	271	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ff+ C+ G++C+F+H+ Traes_3AS_6DA07CB6A.1 249 PVCKFFLTLQGCRNGSSCSFSHD 271 78********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0065	218	244	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.192	218	245	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-6	220	243	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	221	243	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.074	246	272	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.281	246	273	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-4	249	271	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MLDIQPLPIL QPFGYQALCK MFRDNYFDED SNLKIGKKEA TLIGNLCAFQ FWQRMFKDKY 60 RQEYLKMVAD AQEPTAYHAF ISKQEEVWCA FHNLLPAALN NISEIYDDVM CTLHRFRPSF 120 LVEIDPPKYL LPSEFHHVCL HHKVLEPEDM NSLSLESESS HLGSQRKCAA TPYVSATDFG 180 VTLTVVVLKA LIKEMKTQLA EDNVVSCRER VSGYAQQTVE SEMCVFFIRG SCTRGNTCPF 240 SHSSRAPKPV CKFFLTLQGC RNGSSCSFSH DCGSSNMKTS SITSGICSQE DMPTAVCCAK 300 LLPAGGDGHV LIMNDKNLQF SYKICHYYDP TKIVTCTPGL HSVESDSVTN GIMILQNVAD 360 PCRLILGGER KLPVPWAKLQ RVFWFADFDS DESMNERVLL QKFFEHIAIK TLSETLPNLQ 420 VVLIMNNTKF VHLQAERLAR ECFYFLRESF MFDEGTLGWF SDAPSYPNGM QVSAPVAYVF 480 NMHPPTGIQF GDYQTELRKA LRRA

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MLDIQPLPIL QPFGYQALCK MFRDNYFDED SNLKIGKKEA TLIGNLCAFQ FWQRMFKDKY  60
RQEYLKMVAD AQEPTAYHAF ISKQEEVWCA FHNLLPAALN NISEIYDDVM CTLHRFRPSF  120
LVEIDPPKYL LPSEFHHVCL HHKVLEPEDM NSLSLESESS HLGSQRKCAA TPYVSATDFG  180
VTLTVVVLKA LIKEMKTQLA EDNVVSCRER VSGYAQQTVE SEMCVFFIRG SCTRGNTCPF  240
SHSSRAPKPV CKFFLTLQGC RNGSSCSFSH DCGSSNMKTS SITSGICSQE DMPTAVCCAK  300
LLPAGGDGHV LIMNDKNLQF SYKICHYYDP TKIVTCTPGL HSVESDSVTN GIMILQNVAD  360
PCRLILGGER KLPVPWAKLQ RVFWFADFDS DESMNERVLL QKFFEHIAIK TLSETLPNLQ  420
VVLIMNNTKF VHLQAERLAR ECFYFLRESF MFDEGTLGWF SDAPSYPNGM QVSAPVAYVF  480
NMHPPTGIQF GDYQTELRKA LRRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354570	0.0	AK354570.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1008I13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191083.1	0.0	zinc finger CCCH domain-containing protein 4
Swissprot	Q1EHT7	0.0	C3H4_ORYSJ; Zinc finger CCCH domain-containing protein 4
TrEMBL	A0A3B6EGA4	0.0	A0A3B6EGA4_WHEAT; Uncharacterized protein
STRING	Traes_3AS_6DA07CB6A.1	0.0	(Triticum aestivum)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kisiov VV,Kaiser RI Ab initio/Rice-Ramsperger-Kassel-Marcus study of the singlet C4H4 potential energy surface and of the reactions of C2(X1 Sigmag+) with C4H4(X1A1g) and C(1D) with C3H4 (allene and methylacetylene). J Chem Phys, 2006. 125(13): p. 133113 [PMID:17029439] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]