PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_6626D4A69.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 149aa    MW: 16262.1 Da    PI: 9.8529
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_6626D4A69.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-15448347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +WT++E++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Traes_3AS_6626D4A69.1  4 PWTEDEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 48
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.046153IPR017930Myb domain
SMARTSM007171.4E-12151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-12147IPR009057Homeodomain-like
SuperFamilySSF466899.72E-17253IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-17251IPR006447Myb domain, plants
PfamPF002491.0E-12448IPR001005SANT/Myb domain
CDDcd001673.78E-12449No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
KGVPWTEDEH KLFLLGLKKY GKGDWRNISR NFVQTRTPTQ VASHAQKYFI RLSSGGGKDK  60
RRSSIHDITT VHLDDQPPSP SQSSMITQSS APAPSPATGQ YSLPADTKQH GGANAPYNSP  120
PSYGMGLQDQ GLQCGPLHDQ LAANRSMLY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200804.11e-103transcription factor DIVARICATA-like
RefseqXP_020200805.11e-103transcription factor DIVARICATA-like
SwissprotQ8S9H72e-43DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A446N2Z21e-104A0A446N2Z2_TRITD; Uncharacterized protein
STRINGTraes_3AS_6626D4A69.11e-107(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-22Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]