PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_5E49D47AF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 129aa    MW: 14676.8 Da    PI: 10.1852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_5E49D47AF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.5e-183279148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd ll  +++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Traes_3AS_5E49D47AF.1 32 RGPWTLEEDNLLMSYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 79
                           89*********************************************7 PP
2Myb_DNA-binding52.88.9e-1785128146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T+eE++ ++++++++G++ W++Ia++++ gRt++++k++w++
  Traes_3AS_5E49D47AF.1  85 RGNLTAEEQLVILELHAKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 128
                            7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.792779IPR017930Myb domain
SuperFamilySSF466893.56E-3130126IPR009057Homeodomain-like
SMARTSM007172.2E-133181IPR001005SANT/Myb domain
PfamPF002491.5E-153279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-243386IPR009057Homeodomain-like
CDDcd001673.17E-93479No hitNo description
PROSITE profilePS5129425.02880129IPR017930Myb domain
SMARTSM007175.0E-1084129IPR001005SANT/Myb domain
PfamPF002492.9E-1585128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2387129IPR009057Homeodomain-like
CDDcd001674.91E-1089128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MSRRKGAAAA GGGGAGPMEM AAMEEEAAEL RRGPWTLEED NLLMSYIACH GEGRWNLLAR  60
CSGLKRTGKS CRLRWLNYLK PDIKRGNLTA EEQLVILELH AKWGNRWSRI AQHLPGRTDN  120
EIKNYWRTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2629128199MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-262912824122MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-105HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814736.12e-70transcription factor MYB2-like
SwissprotQ2QZJ89e-61JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A3B6EAR02e-87A0A3B6EAR0_WHEAT; Uncharacterized protein
TrEMBLA0A446N1Y23e-88A0A446N1Y2_TRITD; Uncharacterized protein
TrEMBLA0A446N2082e-87A0A446N208_TRITD; Uncharacterized protein
TrEMBLM7Y9932e-87M7Y993_TRIUA; Transcription factor MYB21
STRINGTraes_3AS_5E49D47AF.14e-89(Triticum aestivum)
STRINGTRIUR3_09345-P13e-88(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-59myb domain protein 62
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  5. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  6. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]