PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_5869E3C31.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 38aa MW: 4544.14 Da PI: 11.4058 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.2 | 6.9e-12 | 2 | 30 | 18 | 47 |
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47 q+G+ +W++Ia+++ gR++k+c++rw++ Traes_3AS_5869E3C31.1 2 QYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 30 89*************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.117 | 1 | 35 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-15 | 2 | 37 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.01E-10 | 2 | 35 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-10 | 2 | 31 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.57E-7 | 2 | 29 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 38 aa Download sequence Send to blast |
GQYGPQNWNL IAEKLDGRSG KSCRLRWFNQ LDPRINRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679419 | 3e-50 | HF679419.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB13 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631112.1 | 7e-21 | transcription factor CSA-like | ||||
Swissprot | Q5NBM8 | 6e-22 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A453EQJ9 | 6e-20 | A0A453EQJ9_AEGTS; Uncharacterized protein | ||||
TrEMBL | A2WNE0 | 5e-20 | A2WNE0_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI01G12050.1 | 2e-20 | (Oryza rufipogon) | ||||
STRING | ONIVA01G13400.1 | 2e-20 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 8e-22 | myb domain protein 105 |