PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_55E9080C2.2 | ||||||||
Common Name | WAG-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 273aa MW: 30914.7 Da PI: 9.1754 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.6 | 1.2e-31 | 46 | 96 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Traes_3AS_55E9080C2.2 46 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 96 79***********************************************95 PP | |||||||
2 | K-box | 92 | 1.1e-30 | 114 | 211 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 s++ ++e +a+++qqe++kL+++i++Lq ++ R l+ +++++++l++L+qLe +Lek++ kiR++Knel+++++e++qk+e elq+ Traes_3AS_55E9080C2.2 114 SNS-GtVAEVNAQYYQQESSKLRQQISSLQnSNSRSLVRDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELMYAEVEYMQKREMELQN 200 333.25999*********************9899****************************************************** PP K-box 90 enkaLrkklee 100 +n +Lr+k+ e Traes_3AS_55E9080C2.2 201 DNIYLRSKVSE 211 ********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.88 | 38 | 98 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.8E-42 | 38 | 97 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.30E-45 | 39 | 112 | No hit | No description |
SuperFamily | SSF55455 | 1.23E-32 | 39 | 110 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 40 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 40 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 47 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 60 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 75 | 96 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.4E-22 | 123 | 209 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.742 | 124 | 215 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MMSMMADLSC GASGVTVNDH QLAAPAPEDS AAAGSEKMGR GRIEIKRIEN TTNRQVTFCK 60 RRNGLLKKAY ELSVLCDAEV ALIVFSSRGR LYEYSNNSVK ATIERYKKAN SDTSNSGTVA 120 EVNAQYYQQE SSKLRQQISS LQNSNSRSLV RDSVSTMTLR DLKQLEGRLE KGIAKIRARK 180 NELMYAEVEY MQKREMELQN DNIYLRSKVS ENERGQQPVN MMASGSASSE YDHMVSPYDS 240 RNFLQANIMQ QQQQHYSQQL QPTALQLGQQ YFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-21 | 38 | 125 | 1 | 91 | MEF2C |
5f28_B | 9e-21 | 38 | 125 | 1 | 91 | MEF2C |
5f28_C | 9e-21 | 38 | 125 | 1 | 91 | MEF2C |
5f28_D | 9e-21 | 38 | 125 | 1 | 91 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB465688 | 0.0 | AB465688.1 Triticum aestivum WAG-2 mRNA for MADS-box transcription factor, complete cds, cultivar: Norin 26. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153238.1 | 0.0 | MADS-box transcription factor 3-like isoform X1 | ||||
Swissprot | Q40704 | 1e-147 | MADS3_ORYSJ; MADS-box transcription factor 3 | ||||
TrEMBL | A0A0S1W5Y3 | 0.0 | A0A0S1W5Y3_TRIDC; WAG-2h MADS box transcription factor | ||||
TrEMBL | A0A446N8Y0 | 0.0 | A0A446N8Y0_TRITD; Uncharacterized protein | ||||
TrEMBL | C0STS7 | 0.0 | C0STS7_WHEAT; MADS-box transcription factor | ||||
STRING | Traes_3AS_55E9080C2.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-102 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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