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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Traes_3AS_465421436.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 63aa MW: 7435.42 Da PI: 6.6355 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 29.2 | 3e-09 | 25 | 63 | 1 | 39 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39
+fY++YA e GFsvrks+ + ++ i+ r+ vCs++g
Traes_3AS_465421436.1 25 EFYKKYALEKGFSVRKSYVEWDGSSKYIILRKIVCSRQG 63
6************************************98 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 5.8E-7 | 25 | 63 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 63 aa Download sequence Send to blast |
ASDETMFEYL NVVNKMFDSE AEGYEFYKKY ALEKGFSVRK SYVEWDGSSK YIILRKIVCS 60 RQG |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG670306 | 6e-87 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020188780.1 | 1e-34 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A452XDK6 | 3e-36 | A0A452XDK6_AEGTS; Uncharacterized protein | ||||
| STRING | Traes_3AS_465421436.1 | 8e-39 | (Triticum aestivum) | ||||
| Orthologous Group ? help Back to Top | |||
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| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP2449 | 9 | 76 |
| Publications ? help Back to Top | |||
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| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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