PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_3AS_4446297C5.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 412aa MW: 44984.3 Da PI: 9.9446 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 38.4 | 3.5e-12 | 66 | 152 | 5 | 97 |
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 r w+ eDei +L +l+ + +g++ +++ v s++ +v+k+++ eK+r+++++++k v++ g +k++d f+l Traes_3AS_4446297C5.1 66 RRWTTEDEIKILEALVRHVKANGTQ--PGARELITAVGASLERkNVTKTEMYEKVRNIRQRYEKAVST---G--ALPEKDDDLRKFKL 146 78****************9999976..567999******9986269********************99...3..44567889999*** PP DUF573 92 skkiWg 97 s+++Wg Traes_3AS_4446297C5.1 147 SEQVWG 152 *****8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.8E-17 | 65 | 152 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 412 aa Download sequence Send to blast |
PPAKDKKKGK SLAEPSPSGT AKKAKAGAAE KALSELTPAS EGKKKHKAQP EKTGPWTKLE 60 KPGQPRRWTT EDEIKILEAL VRHVKANGTQ PGARELITAV GASLERKNVT KTEMYEKVRN 120 IRQRYEKAVS TGALPEKDDD LRKFKLSEQV WGENAKQIAA ATMAQNEAAS SKSKKKGQTS 180 KEKTEGYSKG GTAKETTASA DETEGYSKSG TAKQATKEKA DEDSKGGSSK KASTADTPAK 240 SRKRGNQKEE LEGDVKTGTT KETVDTTARN GGTSVRSKGV KSDKEKTDED VENPTPKEAM 300 GDAQNGGTHA LFKKEGETHE EKMDTDANVR GMHKGFDELQ KLYPNLTSYV EDIQAQHPCG 360 ETLKRAFEFM DDEKACALES KIKKQRVAEL RIGMRRADTN KEVTNIFIGL LD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193496.1 | 0.0 | triadin-like | ||||
TrEMBL | A0A3B6E9S7 | 0.0 | A0A3B6E9S7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446N1U1 | 0.0 | A0A446N1U1_TRITD; Uncharacterized protein | ||||
STRING | Traes_3AS_4446297C5.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7289 | 27 | 37 |
Publications ? help Back to Top | |||
---|---|---|---|
|