PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_4220612F3.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 214aa MW: 24127.6 Da PI: 9.4855

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_4220612F3.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174	4.4e-54	16	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp+GfrFhPtdee+++ yL++k+ + +++ ++i evd++k ePw+Lpkk+k +e+ewyf++++d+ky+tg r+nratk+gyWk+tgk Traes_3AS_4220612F3.1 16 LPMGFRFHPTDEEIITSYLAPKILNPAFDA-TAIGEVDLNKNEPWELPKKAKMGENEWYFYCQKDRKYPTGIRTNRATKAGYWKTTGK 102 799************************9.88***********99999******************************* PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 dke+++ ++ l+g+kktLvfykgrap+gekt+Wvmheyrl Traes_3AS_4220612F3.1 103 DKEIVNPhcTSMLIGMKKTLVFYKGRAPSGEKTNWVMHEYRL 144 **9878888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-60	10	180	IPR003441	NAC domain
PROSITE profile	PS51005	56.218	16	179	IPR003441	NAC domain
Pfam	PF02365	4.2E-28	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MVDHLQVQQQ QQQLELPMGF RFHPTDEEII TSYLAPKILN PAFDATAIGE VDLNKNEPWE 60 LPKKAKMGEN EWYFYCQKDR KYPTGIRTNR ATKAGYWKTT GKDKEIVNPH CTSMLIGMKK 120 TLVFYKGRAP SGEKTNWVMH EYRLKINKQS TTSLPSAIGN AASINMSSKE YVVCRIFHKN 180 AGSRLSSMVS HEGNGGATPT DKIWSMSMGT DGAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-49	4	184	3	170	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-49	4	184	3	170	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-49	4	184	3	170	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-49	4	184	3	170	NO APICAL MERISTEM PROTEIN
4dul_A	8e-49	4	184	3	170	NAC domain-containing protein 19
4dul_B	8e-49	4	184	3	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR819764	0.0	FR819764.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC019 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191194.1	1e-136	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-75	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3B6EEG8	1e-162	A0A3B6EEG8_WHEAT; Uncharacterized protein
STRING	Traes_3AS_4220612F3.1	1e-163	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	6e-76	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]