PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_348CA06D5.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 1064aa MW: 119337 Da PI: 7.4313

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_348CA06D5.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.2	2.1e-11	2	44	15	57
HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++ Traes_3AS_348CA06D5.2 2 LESFYSEVQYPKPEDLTEYAASVGLTYNQVRIWFKERRRKERR 44 9999*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.107	1	45	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-11	1	46	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.61E-10	1	51	IPR009057	Homeodomain-like
SMART	SM00389	2.2E-4	1	49	IPR001356	Homeobox domain
CDD	cd00086	1.88E-5	2	35	No hit	No description
Pfam	PF00046	9.9E-9	2	44	IPR001356	Homeobox domain
PROSITE profile	PS50827	10.095	289	348	IPR018501	DDT domain
SMART	SM00571	0.0023	289	348	IPR018501	DDT domain
Pfam	PF02791	2.0E-6	291	343	IPR018501	DDT domain
Pfam	PF15612	1.0E-5	567	598	IPR028942	WHIM1 domain
Pfam	PF15613	1.4E-10	690	761	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1064 aa Download sequence Send to blast
MLESFYSEVQ YPKPEDLTEY AASVGLTYNQ VRIWFKERRR KERRHMEAAE VHVETQASAR 60 SNWPRCSSSR SSNSSQSPMQ VADTTGHHSY QDQSVLKKRK IMSPTAQRST LPFENNDPVR 120 KHGKGKGLMT VWHAMYSQTA EIQDCSSFID ESGCLRSLRP FEDFGGKLAQ KQTLPRKKVN 180 KKSRPAPSKR KVTCGRVTDL KEHPLVECHL SVDESESSEL RTEHATLVDD EELELSELQA 240 GPNPLRCSAH ISSTGRHGCP LCKDLLARFP PTSVRMKQPF PTKPWESSPE MVKKLFQVVR 300 FVYTHFGSMD VHPFTFDEFA QAFHDKDSLL LGKVHVSLLK LLMLNTERGS GSVFVPRSSK 360 DSRFSSFLNF VREQEFDVNF WIKSLNSLTW VEILRQVLVA SGFGSDHHML NRNFFNKEKN 420 QMVKYGLRPR TLKGELFALL SKKGSGGLKV AELAKSPQII GLNLSGASEV EQLIFSTLSS 480 DITLFEKIAP SAYRLRVDPR IKGKEDSRSD TEDSGTVDDD GDASSSGDES DGPQESYPEH 540 ESRIIRWRQK NVHKNMNKCS EIDESYSGER WLLGLMEGEY SDLSIDEKLD CLVALIDVVS 600 GAGSVPRLEE PQSVLSNIQR AQSHASGGKI KKCTRTIYQS SDEYLNRPGS SHSFDSSMQG 660 QSGSLRSQDY IADSGANESP TGFAHQPQIV LLGSDRRYNN YWLFLGPCRA DDPGHRRVYF 720 ESSEDGHWEV IDSPQDLLSL LSVLDIRGTR EAHLLASMKK RQSCLFEGMK KHLEDGCVVA 780 LTASSDSSRS GTSSGNRYSP KPSSGDGASP LSDIDSASVP TYLAGNLQNA SSAIGIGVGR 840 RSDEKMLKWE RLQALDKWIW TSFYSSLTAV KCGKRSFKES LVHCESCHDL YWRDEKHCRI 900 CHSTFEVGFD LEERYAIHVA TCREPEDLYD VPNHKVLPSQ LQALKAAIHA IEARMPTAAF 960 TGLWMKSSHN LWVKRLRRTS SLPELLQVLV DFVGAIDEDW LYQRSSAVSF SSYVDDITVY 1020 FQTMPQTTSA VALWVVKLDA LIAPHLAQAD SGRGLGKGSI QTRA

Sequence ? help Back to Top

Protein Sequence Length: 1064 aa Download sequence Send to blast

MLESFYSEVQ YPKPEDLTEY AASVGLTYNQ VRIWFKERRR KERRHMEAAE VHVETQASAR  60
SNWPRCSSSR SSNSSQSPMQ VADTTGHHSY QDQSVLKKRK IMSPTAQRST LPFENNDPVR  120
KHGKGKGLMT VWHAMYSQTA EIQDCSSFID ESGCLRSLRP FEDFGGKLAQ KQTLPRKKVN  180
KKSRPAPSKR KVTCGRVTDL KEHPLVECHL SVDESESSEL RTEHATLVDD EELELSELQA  240
GPNPLRCSAH ISSTGRHGCP LCKDLLARFP PTSVRMKQPF PTKPWESSPE MVKKLFQVVR  300
FVYTHFGSMD VHPFTFDEFA QAFHDKDSLL LGKVHVSLLK LLMLNTERGS GSVFVPRSSK  360
DSRFSSFLNF VREQEFDVNF WIKSLNSLTW VEILRQVLVA SGFGSDHHML NRNFFNKEKN  420
QMVKYGLRPR TLKGELFALL SKKGSGGLKV AELAKSPQII GLNLSGASEV EQLIFSTLSS  480
DITLFEKIAP SAYRLRVDPR IKGKEDSRSD TEDSGTVDDD GDASSSGDES DGPQESYPEH  540
ESRIIRWRQK NVHKNMNKCS EIDESYSGER WLLGLMEGEY SDLSIDEKLD CLVALIDVVS  600
GAGSVPRLEE PQSVLSNIQR AQSHASGGKI KKCTRTIYQS SDEYLNRPGS SHSFDSSMQG  660
QSGSLRSQDY IADSGANESP TGFAHQPQIV LLGSDRRYNN YWLFLGPCRA DDPGHRRVYF  720
ESSEDGHWEV IDSPQDLLSL LSVLDIRGTR EAHLLASMKK RQSCLFEGMK KHLEDGCVVA  780
LTASSDSSRS GTSSGNRYSP KPSSGDGASP LSDIDSASVP TYLAGNLQNA SSAIGIGVGR  840
RSDEKMLKWE RLQALDKWIW TSFYSSLTAV KCGKRSFKES LVHCESCHDL YWRDEKHCRI  900
CHSTFEVGFD LEERYAIHVA TCREPEDLYD VPNHKVLPSQ LQALKAAIHA IEARMPTAAF  960
TGLWMKSSHN LWVKRLRRTS SLPELLQVLV DFVGAIDEDW LYQRSSAVSF SSYVDDITVY  1020
FQTMPQTTSA VALWVVKLDA LIAPHLAQAD SGRGLGKGSI QTRA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153547.1	0.0	homeobox-DDT domain protein RLT3-like isoform X1
TrEMBL	A0A3B6ED19	0.0	A0A3B6ED19_WHEAT; Uncharacterized protein
STRING	Traes_3AS_348CA06D5.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-136	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]