PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_337600412.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 618aa MW: 67576.2 Da PI: 6.9608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.7e-13 | 464 | 510 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Traes_3AS_337600412.3 464 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 510 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.0E-48 | 60 | 245 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.806 | 460 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-18 | 463 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.94E-15 | 463 | 514 | No hit | No description |
Pfam | PF00010 | 3.2E-10 | 464 | 510 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-18 | 464 | 522 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-16 | 466 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MVMKMEVEED GANGGNGGAW TEEDRDLSTT VLGRDAFAYL TKGGGTISEG LVAASSPVDL 60 QNKLQELIES EHPGAGWNYA IFWQLSRTKS GDLVLGWGDG SCREPNDAEL AAAASAGNDD 120 AKQRMWKRVL QRLHKAFGGA DEEDYAPTIG QVTDTEMFFL ASMYFAFPRR AGAPGQVFAA 180 GLPLWVPNSE RNVFPANYCY RGYLASTAGF RTILLVPFET GVLELGSMQQ VAESSDTLQT 240 IKSVFAGTGG NKDIIPSREG NGHIERSPGL AKIFGKDLNL GRSSAGPVIG VSKVDERPWE 300 QRTAGGGSSL LPNVQKGLQS FTWSQARGLN SHQQKFGNGI LIVSNEATHG NNRTADSSTT 360 TQFQLQKAPQ LQKLPLLQKP PQLVKPLQMV NQQQLQPQAP RQIDFSAGTS SKSGVLVTRA 420 AVLDGDSSEV NGLCKEEGTT PVIEDRRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF 480 YALRAVVPNI SKMDKASLLG DAIAYITDLQ KKLKDMETER ERFLESGMVD PRERAPRPEV 540 DIQVVQDEVL VRVMSPLENH PVKKVFEAFE EADVRVGESK LTGNNGTVVH SFIIKCPGSE 600 QQTREKVIAA MSRAMSSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-28 | 458 | 520 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 2e-28 | 458 | 520 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 2e-28 | 458 | 520 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 2e-28 | 458 | 520 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 2e-28 | 458 | 520 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 2e-28 | 458 | 520 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 2e-28 | 458 | 520 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 2e-28 | 458 | 520 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 445 | 453 | RRPRKRGRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376820 | 0.0 | AK376820.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137B23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154206.1 | 0.0 | transcription factor bHLH13-like | ||||
Refseq | XP_020154207.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | A0A3B6EFS3 | 0.0 | A0A3B6EFS3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AS_337600412.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5174 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-60 | bHLH family protein |
Publications ? help Back to Top | |||
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