PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_1C4870CDE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Trihelix | ||||||||
Protein Properties | Length: 144aa MW: 16020.6 Da PI: 4.6146 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.2 | 8.7e-13 | 1 | 49 | 38 | 85 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 m e+gf++sp+qC++k+++lnkryk++ e +++ +++++ + +++d + Traes_3AS_1C4870CDE.1 1 MVEKGFKVSPQQCEDKFNDLNKRYKRVVELLGRGtACNVVANPALLDAM 49 679******************************9459999999988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.6E-10 | 1 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MVEKGFKVSP QQCEDKFNDL NKRYKRVVEL LGRGTACNVV ANPALLDAMG ELTAKAKEEA 60 RKLLSSKRLF FREMCNYHNP GGTATASHGT QGGRQVVNFS TRSEDDSEDD VLSSKEAEEE 120 DDDYDLDDVE EKAPGTKRSD GRID |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-142 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163766.1 | 3e-67 | uncharacterized protein LOC109749193 | ||||
TrEMBL | A0A3B6EBZ1 | 5e-99 | A0A3B6EBZ1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AS_1C4870CDE.1 | 1e-102 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11944 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 1e-36 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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