PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_1B9CD4863.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 424aa MW: 45119.1 Da PI: 7.333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_1B9CD4863.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	7.8e-05	314	352	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Traes_3AS_1B9CD4863.1 314 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 352 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.039	302	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-11	312	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-5	312	356	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.7E-9	316	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MMASSSSSSD LSADHRLLQD DLPWPSPSSM PPPLAPALHH AVGGNHHQWS QPLMLEQLSS 60 DELEALLSAQ VHQHHSHSQL LAAPLTANPH HQLSSLLMMQ ELGFQWSSSC GAADGDSNET 120 AQDEVKEDAK LPGPLVLPRP SSSSSIAYDD DMAVDVLPSV NVSRLQKIPC PVAAGPFGGR 180 AEATLEMLAS AKFCKSLLGC SQASSTVLLH NGGGTAPLLG MGGHHVAYGP PPPVHRLQGP 240 SSILHTYNKM GVPAALLSGN GSALQAATGR SSGGGGLHDE QQLQMLEVSS KKKPRLLHSR 300 PATNNNILPS FKVRKEKLGD RIAALQQLVS PFGKTDTASV LMEAIGYIKF LQDQVETLSG 360 PYMRSAKHKK ARTTQQRGPS DTGDQKEEAK VDLRSRGLCL VPLACTSYVT NENGIWAPPN 420 FRGN

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MMASSSSSSD LSADHRLLQD DLPWPSPSSM PPPLAPALHH AVGGNHHQWS QPLMLEQLSS  60
DELEALLSAQ VHQHHSHSQL LAAPLTANPH HQLSSLLMMQ ELGFQWSSSC GAADGDSNET  120
AQDEVKEDAK LPGPLVLPRP SSSSSIAYDD DMAVDVLPSV NVSRLQKIPC PVAAGPFGGR  180
AEATLEMLAS AKFCKSLLGC SQASSTVLLH NGGGTAPLLG MGGHHVAYGP PPPVHRLQGP  240
SSILHTYNKM GVPAALLSGN GSALQAATGR SSGGGGLHDE QQLQMLEVSS KKKPRLLHSR  300
PATNNNILPS FKVRKEKLGD RIAALQQLVS PFGKTDTASV LMEAIGYIKF LQDQVETLSG  360
PYMRSAKHKK ARTTQQRGPS DTGDQKEEAK VDLRSRGLCL VPLACTSYVT NENGIWAPPN  420
FRGN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153231.1	0.0	uncharacterized protein LOC109738546
TrEMBL	A0A3B6EAQ0	0.0	A0A3B6EAQ0_WHEAT; Uncharacterized protein
STRING	Traes_3AS_1B9CD4863.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-41	bHLH family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]