PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_0D78930B4.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 274aa    MW: 29138.6 Da    PI: 5.7361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_0D78930B4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-09194235955
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Traes_3AS_0D78930B4.1 194 AKVRRERISERLKVLQDLVPNG-----TKVDMVTMLEKAITYVKFLQ 235
                            589*****************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.615185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12187242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.04E-13187239No hitNo description
SuperFamilySSF474594.19E-13189244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-11191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6195235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MACKRATTRE LRAMYDDEPS SMSLELFGYH GVVVDGDDEE GDTATALPQL SFVDNFKGGC  60
GSAAADYYSW AYNASGGTPG ASSSSTSSVL SFEHAGGAGH QLAYNSSTGD DDCALWMDTM  120
ADQHGAAKFG FMNPGSADVV PEIQESSIKQ PAKSAQKRSS SGGEAQAAVK KQCGGGRKSK  180
AKVVPTKDPQ SVVAKVRRER ISERLKVLQD LVPNGTKVDM VTMLEKAITY VKFLQLQVKV  240
LATDEFWPVQ GGKAPELSQV KTALDAILSS QQQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9246600.0AB924660.1 Triticum aestivum gene for MFT-3A, complete cds, cultivar: Chinese Spring, clone: WCS1322O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186198.11e-179transcription factor bHLH113-like
TrEMBLA0A3B6E8Q40.0A0A3B6E8Q4_WHEAT; Uncharacterized protein
STRINGTraes_3AS_0D78930B4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.17e-51ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]