PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_0D78930B4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 274aa MW: 29138.6 Da PI: 5.7361 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.9 | 4.1e-09 | 194 | 235 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L++l+P+ +K++ +++LekA+ Y+k Lq Traes_3AS_0D78930B4.1 194 AKVRRERISERLKVLQDLVPNG-----TKVDMVTMLEKAITYVKFLQ 235 589*****************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.615 | 185 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 187 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.04E-13 | 187 | 239 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-13 | 189 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-11 | 191 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-6 | 195 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MACKRATTRE LRAMYDDEPS SMSLELFGYH GVVVDGDDEE GDTATALPQL SFVDNFKGGC 60 GSAAADYYSW AYNASGGTPG ASSSSTSSVL SFEHAGGAGH QLAYNSSTGD DDCALWMDTM 120 ADQHGAAKFG FMNPGSADVV PEIQESSIKQ PAKSAQKRSS SGGEAQAAVK KQCGGGRKSK 180 AKVVPTKDPQ SVVAKVRRER ISERLKVLQD LVPNGTKVDM VTMLEKAITY VKFLQLQVKV 240 LATDEFWPVQ GGKAPELSQV KTALDAILSS QQQP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB924660 | 0.0 | AB924660.1 Triticum aestivum gene for MFT-3A, complete cds, cultivar: Chinese Spring, clone: WCS1322O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186198.1 | 1e-179 | transcription factor bHLH113-like | ||||
TrEMBL | A0A3B6E8Q4 | 0.0 | A0A3B6E8Q4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AS_0D78930B4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 7e-51 | ROOT HAIR DEFECTIVE6 |
Publications ? help Back to Top | |||
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