PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_037375C84.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 248aa    MW: 27336.1 Da    PI: 8.2226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_037375C84.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1273117554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h + Er+RR+++N++f+ L+++lP+       K +K +iL  A eY++sL
  Traes_3AS_037375C84.1  73 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILITAREYVNSL 117
                            8899********************95.....4999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.92268117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1669138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-1170121No hitNo description
Gene3DG3DSA:4.10.280.102.8E-1371116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-1073117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1174123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1705.6E-4117136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEPGVVPASA FSRYARHLGA RRRPKPACGQ KMFKKSMSVL VKMQAAMRYS HQQHHFQQAS  60
PEAELSSVNQ LQHMISERKR REKLNDSFQA LKTVLPPGSK KDKTSILITA REYVNSLKSK  120
VCDLEEKNKA LQAQLAQCAR DAGVEEDDAE KVEIQITRVA ADREDGTTTS EVCTVKIAAR  180
PAHGNTMDVV LRTLQCLNDQ MGEDDVSLVA MSTSDGDAGN GLTGAFLTMQ LKSASGAKWE  240
EEMVREAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681ERKRRE
27782RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679260.0AK367926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065A01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164742.11e-174putative transcription factor bHLH041 isoform X1
TrEMBLA0A446N6680.0A0A446N668_TRITD; Uncharacterized protein
STRINGTraes_3AS_037375C84.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-29bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]