PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_FC5523394.2 | ||||||||
Common Name | ABFB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 122aa MW: 14006.1 Da PI: 10.0084 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43 | 9.7e-14 | 38 | 91 | 5 | 58 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r rr++kNRe+A rsR+RK+a++ eLe + L++eN +Lk e +++ + ++ Traes_3AL_FC5523394.2 38 RRHRRMIKNRESAARSRARKQAYTVELEAELNHLKEENARLKAEEKTILLTKKQ 91 689***************************************997776555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.8E-12 | 33 | 98 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.852 | 36 | 81 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.7E-14 | 38 | 85 | No hit | No description |
CDD | cd14707 | 3.79E-19 | 38 | 92 | No hit | No description |
SuperFamily | SSF57959 | 1.97E-11 | 38 | 84 | No hit | No description |
Pfam | PF00170 | 2.7E-11 | 38 | 90 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 41 | 56 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MTQADMMNCM GEGAMMENGG TRKRGAPEDQ SCERSIERRH RRMIKNRESA ARSRARKQAY 60 TVELEAELNH LKEENARLKA EEKTILLTKK QMLVEKMIEQ SKENVNAKKG APLSRHCGSC 120 IW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity in yeast (PubMed:17604002, PubMed:21055780, PubMed:18236009). Involved in abscisic acid (ABA) signaling pathway. Binds to the G-box motif 5'-CACGTG-3' of TRAB1 gene promoter (PubMed:17604002). Involved in the regulation of pollen maturation. May act as negative regulator of salt stress response (PubMed:18236009). Together with PYL5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:21055780, PubMed:18236009, PubMed:22071266). Induced by salt stress. Down-regulated by cold and drought stresses (PubMed:18236009). {ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF519804 | 0.0 | AF519804.1 Triticum aestivum ABA response element binding factor (ABFB) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182640.1 | 2e-77 | protein ABSCISIC ACID-INSENSITIVE 5-like | ||||
Swissprot | Q8RZ35 | 4e-53 | ABI5_ORYSJ; bZIP transcription factor ABI5 homolog | ||||
TrEMBL | A0A446NV75 | 5e-82 | A0A446NV75_TRITD; Uncharacterized protein | ||||
TrEMBL | Q8LK78 | 5e-82 | Q8LK78_WHEAT; ABA response element binding factor | ||||
STRING | Traes_3AL_FC5523394.2 | 4e-84 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3830 | 35 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36270.1 | 8e-23 | bZIP family protein |
Publications ? help Back to Top | |||
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