PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AL_F9CB475F5.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 833aa MW: 91618.9 Da PI: 6.5763

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AL_F9CB475F5.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.1	1.9e-10	604	643	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++Fek++yps+ ++e LA++lgLt q++ WF R Traes_3AL_F9CB475F5.2 604 QKLKAYFEKEPYPSRPAKESLAQELGLTFHQITRWFSSTR 643 78**********************************8776 PP
2	PHD	42.1	2e-14	241	296	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++C + + +++++lCdg C++ fH+kCl+++l e++p+g wlC+ C++k Traes_3AL_F9CB475F5.2 241 FCAICASkhVTLKNDIILCDGvCDRGFHQKCLNPPLLAEDIPQGdeGWLCPACDCK 296 7****65555****77*****************999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	4.21E-14	231	299	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.8E-13	237	296	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.021	239	296	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	1.6E-11	241	296	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	2.5E-10	241	294	IPR001965	Zinc finger, PHD-type
CDD	cd15504	1.11E-25	241	293	No hit	No description
PROSITE pattern	PS01359	0	242	293	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50071	13.102	589	649	IPR001356	Homeobox domain
SMART	SM00389	6.4E-11	592	653	IPR001356	Homeobox domain
CDD	cd00086	5.74E-10	594	647	No hit	No description
SuperFamily	SSF46689	1.97E-10	597	648	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-11	604	653	IPR009057	Homeodomain-like
Pfam	PF00046	7.1E-8	604	643	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence Send to blast
MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIIANK KYPLRSAHSS TRVLRSTSKD 60 KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN 120 EPVNDSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW 180 KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLL EGKLDESLFD SEGEISSEDI 240 FCAICASKHV TLKNDIILCD GVCDRGFHQK CLNPPLLAED IPQGDEGWLC PACDCKLDCI 300 DLLNELQGST LAMHDSWEKV FPESTSNGLN QIGASDLPSD DSEEDYDPTL AEGDTVDENK 360 SSAEDGDEGS DSDDLDFITS SDESEPSKKK RSESKNKNTV NDLALPSDDS EDDDFDPEGP 420 NSSEDQKTKT NSDESDFTSD SDDFCAEISK SSGKDKVSAP SFSDQTNGVD IMEAELEQDS 480 VLPASNRRQV GHLDYKKLYD VCLFLAFLRT INEAYGKETT DSSDEEEWSG HSPNGNPEDS 540 DTDSFAGPLK PAKTRRARGG RQNNERTPQS ERHSGSVSEQ HPEVLSNGTS STARKKSYGP 600 IVNQKLKAYF EKEPYPSRPA KESLAQELGL TFHQITRWFS STRHYSRVSA AKKGKRLENY 660 TAENNDGIAA DSIQQREPNG SVLGKPNVDR NGIVSEERMA QKNLDEGERE DTPFRQHISC 720 EQTLDGTPPA NKHNTANSRN DTSRNAEDTP LGQDIGCEQT VAAVNQNCTI GSSNVGSPKG 780 APGGNKRLKN SPRSVGSPRR GSAEKNIPGL EHVDEARRKA ILRELRKMKA AGR

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence Send to blast

MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIIANK KYPLRSAHSS TRVLRSTSKD  60
KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN  120
EPVNDSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW  180
KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLL EGKLDESLFD SEGEISSEDI  240
FCAICASKHV TLKNDIILCD GVCDRGFHQK CLNPPLLAED IPQGDEGWLC PACDCKLDCI  300
DLLNELQGST LAMHDSWEKV FPESTSNGLN QIGASDLPSD DSEEDYDPTL AEGDTVDENK  360
SSAEDGDEGS DSDDLDFITS SDESEPSKKK RSESKNKNTV NDLALPSDDS EDDDFDPEGP  420
NSSEDQKTKT NSDESDFTSD SDDFCAEISK SSGKDKVSAP SFSDQTNGVD IMEAELEQDS  480
VLPASNRRQV GHLDYKKLYD VCLFLAFLRT INEAYGKETT DSSDEEEWSG HSPNGNPEDS  540
DTDSFAGPLK PAKTRRARGG RQNNERTPQS ERHSGSVSEQ HPEVLSNGTS STARKKSYGP  600
IVNQKLKAYF EKEPYPSRPA KESLAQELGL TFHQITRWFS STRHYSRVSA AKKGKRLENY  660
TAENNDGIAA DSIQQREPNG SVLGKPNVDR NGIVSEERMA QKNLDEGERE DTPFRQHISC  720
EQTLDGTPPA NKHNTANSRN DTSRNAEDTP LGQDIGCEQT VAAVNQNCTI GSSNVGSPKG  780
APGGNKRLKN SPRSVGSPRR GSAEKNIPGL EHVDEARRKA ILRELRKMKA AGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	136	KKKVPNEPVNDSTAAQPAARKRK
2	132	138	ARKRKRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251701	0.0	AK251701.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf120a17, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179245.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179246.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179247.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179248.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179249.1	0.0	homeobox protein HAZ1-like
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A446NMR1	0.0	A0A446NMR1_TRITD; Uncharacterized protein
STRING	Traes_3AL_F9CB475F5.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	8e-81	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]