PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_3AL_F42853DA5.1 | ||||||||
Common Name | TRAES_3BF023000040CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 53aa MW: 6371.29 Da PI: 11.2311 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.6 | 6.6e-06 | 1 | 15 | 42 | 56 |
HHHHHHHHHHHHHHH CS Homeobox 42 rqVkvWFqNrRakek 56 rqVk+WFqNrR++ k Traes_3AL_F42853DA5.1 1 RQVKFWFQNRRTQIK 15 7**********9977 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.31E-6 | 1 | 26 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-4 | 1 | 14 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.507 | 1 | 17 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.20.5.170 | 8.0E-4 | 15 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 53 aa Download sequence Send to blast |
RQVKFWFQNR RTQIKATQER HENSLLKSEL ENLQKENRAM RQLAKGPSRC PSC |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-48 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168333.1 | 6e-28 | homeobox-leucine zipper protein ROC9 | ||||
Swissprot | Q5JMF3 | 2e-23 | ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9 | ||||
TrEMBL | A0A446NPR7 | 3e-30 | A0A446NPR7_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453FK08 | 3e-30 | A0A453FK08_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3AL_F42853DA5.1 | 2e-31 | (Triticum aestivum) | ||||
STRING | Traes_3B_1E2F1C353.1 | 1e-28 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15929 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79840.1 | 1e-12 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|