PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_F0BD265DF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 114aa MW: 13261.8 Da PI: 8.52 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.8e-18 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ +++t++q+++Le +F + +p++++r +++++gLt +qVk+WFqN+R+ +k Traes_3AL_F0BD265DF.1 35 RRLQRLTPQQTQVLEGFFGICAHPDENQRMGMSESTGLTMQQVKFWFQNKRTHMK 89 666899**********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-19 | 18 | 85 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-17 | 19 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.803 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-13 | 33 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-15 | 34 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.29E-13 | 34 | 90 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MPQPQQDRPA RDNDLDISQG NSDGQDGAEG SQPKRRLQRL TPQQTQVLEG FFGICAHPDE 60 NQRMGMSEST GLTMQQVKFW FQNKRTHMKH VTGKEETYRM KAQNEMLREE NKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF332036 | 0.0 | JF332036.1 Triticum turgidum subsp. durum HD-Zip IV transcription factor GL9H2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164122.1 | 2e-69 | homeobox-leucine zipper protein TF1-like | ||||
Swissprot | Q5ZAY0 | 3e-29 | TF1_ORYSJ; Homeobox-leucine zipper protein TF1 | ||||
TrEMBL | M7YX17 | 9e-75 | M7YX17_TRIUA; Homeobox-leucine zipper protein TF1 | ||||
STRING | Traes_3AL_F0BD265DF.1 | 2e-80 | (Triticum aestivum) | ||||
STRING | TRIUR3_16941-P1 | 1e-75 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14930 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 9e-16 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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