PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AL_F09C7CA19.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 439aa MW: 47122.1 Da PI: 4.2389

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AL_F09C7CA19.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.7e-08	2	26	20	46
TTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46 G++ W++ a++++ gRt++++k++w++ Traes_3AL_F09C7CA19.1 2 GNK-WARMAAHLP-GRTDNEIKNYWNT 26 899.*******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-13	1	29	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.289	1	32	IPR017930	Myb domain
Pfam	PF00249	1.5E-6	2	26	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.1E-6	2	31	IPR009057	Homeodomain-like
CDD	cd00167	8.68E-6	3	26	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MGNKWARMAA HLPGRTDNEI KNYWNTRIKR CQRAGLPIYP ASVCNQSSNE DQQGSSDFNC 60 GENLSSDLLN GNGLYLPDFT CDNFIANSEA LSYAPQLSAV SISSLLGQSF ASKNCGFMDQ 120 VNQAGMLKQS DPLLPGLSDT INGALSSVDQ FSNDSENLKK ALGFDYLHEA NSSSKMIAPF 180 GGTLTGSHAF LNGTFSTSRT INGPLKMELP SLQDTESDPN SWLKYTVAPA MQPTELVDPY 240 LQSPTATPSV KSECVSPRNS GLLEELLHEA QGLKSGKNQQ LSVRSSSSSV STPCDTTVVS 300 PEFDICQDYW EEPLNEYAPF SGNSLTGSTA PVSAAPPDVF QLSKISPAQS PSLGSGEQAM 360 EPAYEPGAGD TSSHPENFRP DALFSGNTTD SSVFNNAIAM LLGNDMNTDC KPVFGDGIVF 420 DTSPWSNMPH ACQMSEEFK

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MGNKWARMAA HLPGRTDNEI KNYWNTRIKR CQRAGLPIYP ASVCNQSSNE DQQGSSDFNC  60
GENLSSDLLN GNGLYLPDFT CDNFIANSEA LSYAPQLSAV SISSLLGQSF ASKNCGFMDQ  120
VNQAGMLKQS DPLLPGLSDT INGALSSVDQ FSNDSENLKK ALGFDYLHEA NSSSKMIAPF  180
GGTLTGSHAF LNGTFSTSRT INGPLKMELP SLQDTESDPN SWLKYTVAPA MQPTELVDPY  240
LQSPTATPSV KSECVSPRNS GLLEELLHEA QGLKSGKNQQ LSVRSSSSSV STPCDTTVVS  300
PEFDICQDYW EEPLNEYAPF SGNSLTGSTA PVSAAPPDVF QLSKISPAQS PSLGSGEQAM  360
EPAYEPGAGD TSSHPENFRP DALFSGNTTD SSVFNNAIAM LLGNDMNTDC KPVFGDGIVF  420
DTSPWSNMPH ACQMSEEFK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. Required for anther development (PubMed:19454733, PubMed:20590996). Functions in parallel with UDT1 to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). Required for pollen development. Probably required for controlling tapetal cell size and promoting tapetal programmed cell death (PCD) during anther development. Required for exine and Ubisch body formation in anthers. Interacts with the DNA specific motifs of giberrellin-up-regulated genes of anthers and regulates their expression. Positively regulates the expression of the laurate hydroxylase CYP703A3, known to be essential for the development of pollen exine and anther epicuticular layer (PubMed:19454733). Functions with MYBS1 to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of GAMYB and MYBS1, resulting in the expression of a large set of GA-inducible hydrolases, transporters and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269\|PubMed:14688295, ECO:0000269\|PubMed:19454733, ECO:0000269\|PubMed:20590996, ECO:0000269\|PubMed:22773748}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin in aleurone cells. {ECO:0000269\|PubMed:14688295}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB214883	0.0	AB214883.1 Triticum monococcum mRNA for transcription factor GAMYB, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163715.1	0.0	transcription factor GAMYB
Refseq	XP_020163716.1	0.0	transcription factor GAMYB
Swissprot	Q0JIC2	0.0	GAMYB_ORYSJ; Transcription factor GAMYB
TrEMBL	A0A3B6EK12	0.0	A0A3B6EK12_WHEAT; Uncharacterized protein
TrEMBL	A0A446NSY1	0.0	A0A446NSY1_TRITD; Uncharacterized protein
STRING	Traes_3AL_F09C7CA19.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3947	36	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	1e-30	myb domain protein 33

Publications ? help Back to Top
Gocal GF, et al. Long-day up-regulation of a GAMYB gene during Lolium temulentum inflorescence formation. Plant Physiol., 1999. 119(4): p. 1271-8 [PMID:10198085] Ueguchi-Tanaka M, et al. Rice dwarf mutant d1, which is defective in the alpha subunit of the heterotrimeric G protein, affects gibberellin signal transduction. Proc. Natl. Acad. Sci. U.S.A., 2000. 97(21): p. 11638-43 [PMID:11027362] Sutoh K,Yamauchi D Two cis-acting elements necessary and sufficient for gibberellin-upregulated proteinase expression in rice seeds. Plant J., 2003. 34(5): p. 635-45 [PMID:12787245] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Washio K Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone. Plant Physiol., 2003. 133(2): p. 850-63 [PMID:14500792] Eastmond PJ,Jones RL Hormonal regulation of gluconeogenesis in cereal aleurone is strongly cultivar-dependent and gibberellin action involves SLENDER1 but not GAMYB. Plant J., 2005. 44(3): p. 483-93 [PMID:16236157] Xie Z, et al. Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Plant J., 2006. 46(2): p. 231-42 [PMID:16623886] Tsuji H, et al. GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers. Plant J., 2006. 47(3): p. 427-44 [PMID:16792694] Wang Y,Wang YF,Zhang DB [Identification of the rice (Oryza sativa L.) mutant msp1-4 and expression analysis of its UDT1 and GAMYB genes]. Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao, 2006. 32(5): p. 527-34 [PMID:17075175] Liu SM,Wang ZY,Cai XL [Preliminary screening of target genes of rice transcription factor OsBP-73]. Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao, 2007. 33(5): p. 456-62 [PMID:17960050] Aya K, et al. Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB. Plant Cell, 2009. 21(5): p. 1453-72 [PMID:19454733] Hu L,Tan H,Liang W,Zhang D The Post-meiotic Deficicent Anther1 (PDA1) gene is required for post-meiotic anther development in rice. J Genet Genomics, 2010. 37(1): p. 37-46 [PMID:20171576] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Plackett AR,Thomas SG,Wilson ZA,Hedden P Gibberellin control of stamen development: a fertile field. Trends Plant Sci., 2011. 16(10): p. 568-78 [PMID:21824801] Aya K, et al. The Gibberellin perception system evolved to regulate a pre-existing GAMYB-mediated system during land plant evolution. Nat Commun, 2011. 2: p. 544 [PMID:22109518] Hong YF, et al. Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals. Plant Cell, 2012. 24(7): p. 2857-73 [PMID:22773748] Wang Y, et al. TamiR159 directed wheat TaGAMYB cleavage and its involvement in anther development and heat response. PLoS ONE, 2012. 7(11): p. e48445 [PMID:23133634] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhang Y, et al. GmGBP1, a homolog of human ski interacting protein in soybean, regulates flowering and stress tolerance in Arabidopsis. BMC Plant Biol., 2013. 13: p. 21 [PMID:23388059] Zhang Y, et al. A GAMYB homologue CsGAMYB1 regulates sex expression of cucumber via an ethylene-independent pathway. J. Exp. Bot., 2014. 65(12): p. 3201-13 [PMID:24790111] Yano K, et al. Comprehensive gene expression analysis of rice aleurone cells: probing the existence of an alternative gibberellin receptor. Plant Physiol., 2015. 167(2): p. 531-44 [PMID:25511432] Sutoh K, et al. An N-terminal region of a Myb-like protein is involved in its intracellular localization and activation of a gibberellin-inducible proteinase gene in germinated rice seeds. Biosci. Biotechnol. Biochem., 2015. 79(5): p. 747-59 [PMID:25559339] Kwon CT,Kim SH,Kim D,Paek NC The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling. Rice (N Y), 2015. 8(1): p. 58 [PMID:26202549] Suzuki A, et al. Cloning and expression of five myb-related genes from rice seed. Gene, 1997. 198(1-2): p. 393-8 [PMID:9370307]