PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_EF45936CA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 91aa MW: 10111.4 Da PI: 5.5225 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.1 | 3.2e-10 | 12 | 73 | 1 | 55 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaee 55 lp+G++F+Ptd+el+ e+L+ k++ ++ ++++ +i+ +i++++P++Lp v+ ++ Traes_3AL_EF45936CA.1 12 LPAGVKFDPTDQELL-EHLEGKARPDTrklhplIDEFIpAIEGEnGICYTHPERLPGIVTLKH 73 799************.99****999985665543333334766657**********5332222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-10 | 5 | 74 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.576 | 12 | 91 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
QAASTIQDLP GLPAGVKFDP TDQELLEHLE GKARPDTRKL HPLIDEFIPA IEGENGICYT 60 HPERLPGIVT LKHTRTSSYN TTIANIYTFN I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359631 | 8e-84 | AK359631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1100E16. | |||
GenBank | AK370035 | 8e-84 | AK370035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2103P15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160558.1 | 2e-41 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 2e-32 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A3B6EGS6 | 2e-41 | A0A3B6EGS6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446NK64 | 2e-41 | A0A446NK64_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453F7M5 | 6e-43 | A0A453F7M5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3AL_EF45936CA.1 | 2e-61 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP38737 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 7e-35 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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