PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_E34DF2F08.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 397aa MW: 45275.8 Da PI: 9.7213 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.7 | 3.2e-11 | 15 | 61 | 51 | 99 |
..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 51 iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++++r++l++GW+ Fv++++L +gD ++F + +++el+v+v+r+ Traes_3AL_E34DF2F08.1 15 KSTGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESGELRVGVRRA 61 45788999*************************..449999*****996 PP | |||||||
2 | Auxin_resp | 112.7 | 3.5e-37 | 86 | 167 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+ Wp+S+WrsLk Traes_3AL_E34DF2F08.1 86 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 167 89******************************************************************999.9********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.545 | 1 | 62 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-15 | 12 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.66E-7 | 13 | 60 | No hit | No description |
Pfam | PF02362 | 1.7E-8 | 14 | 61 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.81E-11 | 17 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 4.2E-34 | 86 | 167 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MMLMSSMIIV LTECKSTGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE SGELRVGVRR 60 AMRQLSNVPS SVISSHSMHL GVLATAWHAI NTKSMFTVYY KPRTSPSEFI IPYDQYMESV 120 KNNYSIGMRF RMRFEGEEAP EQRFTGTIVG SENLDQLWPE SNWRSLKVRW DEPSTIPRPD 180 RVSPWKIEPA SSPPVNPLPL SRVKRPRPNV PPVSPESSVL TKEVAAKIDM DSAQAQQRNQ 240 NNMVLQGQEH MTLRTNNLTA SNESDATVQK PMMWSPSPNI GKNHASAFQQ RPSMDNWMQL 300 GRCDASSGAQ SFGDSQGFFM QTFDEAPNRH GSFKNQFQDH SSARHFSDPY TKMQTEASEF 360 HFWNSQSTVY GNPRDQSQGF RFEEHPSNWL RQQQQFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 8e-85 | 18 | 192 | 182 | 357 | Auxin response factor 1 |
4ldw_A | 8e-85 | 18 | 192 | 182 | 357 | Auxin response factor 1 |
4ldw_B | 8e-85 | 18 | 192 | 182 | 357 | Auxin response factor 1 |
4ldx_A | 7e-85 | 18 | 192 | 182 | 357 | Auxin response factor 1 |
4ldx_B | 7e-85 | 18 | 192 | 182 | 357 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 207 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364852 | 0.0 | AK364852.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028N02. | |||
GenBank | AK368785 | 0.0 | AK368785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2079M07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198715.1 | 0.0 | auxin response factor 4-like | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | A0A446P1M8 | 0.0 | A0A446P1M8_TRITD; Auxin response factor | ||||
STRING | Traes_3AL_E34DF2F08.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-110 | auxin response factor 2 |
Publications ? help Back to Top | |||
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