PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_E34DF2F08.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 397aa    MW: 45275.8 Da    PI: 9.7213
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_E34DF2F08.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-1115615199
                           ..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 51 iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           + +++++r++l++GW+ Fv++++L +gD ++F   + +++el+v+v+r+
  Traes_3AL_E34DF2F08.1 15 KSTGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESGELRVGVRRA 61
                           45788999*************************..449999*****996 PP

2Auxin_resp112.73.5e-3786167183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+  Wp+S+WrsLk
  Traes_3AL_E34DF2F08.1  86 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 167
                            89******************************************************************999.9********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.545162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-151275IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-71360No hitNo description
PfamPF023621.7E-81461IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-111789IPR015300DNA-binding pseudobarrel domain
PfamPF065074.2E-3486167IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMLMSSMIIV LTECKSTGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE SGELRVGVRR  60
AMRQLSNVPS SVISSHSMHL GVLATAWHAI NTKSMFTVYY KPRTSPSEFI IPYDQYMESV  120
KNNYSIGMRF RMRFEGEEAP EQRFTGTIVG SENLDQLWPE SNWRSLKVRW DEPSTIPRPD  180
RVSPWKIEPA SSPPVNPLPL SRVKRPRPNV PPVSPESSVL TKEVAAKIDM DSAQAQQRNQ  240
NNMVLQGQEH MTLRTNNLTA SNESDATVQK PMMWSPSPNI GKNHASAFQQ RPSMDNWMQL  300
GRCDASSGAQ SFGDSQGFFM QTFDEAPNRH GSFKNQFQDH SSARHFSDPY TKMQTEASEF  360
HFWNSQSTVY GNPRDQSQGF RFEEHPSNWL RQQQQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A8e-8518192182357Auxin response factor 1
4ldw_A8e-8518192182357Auxin response factor 1
4ldw_B8e-8518192182357Auxin response factor 1
4ldx_A7e-8518192182357Auxin response factor 1
4ldx_B7e-8518192182357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203207KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648520.0AK364852.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028N02.
GenBankAK3687850.0AK368785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2079M07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198715.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A446P1M80.0A0A446P1M8_TRITD; Auxin response factor
STRINGTraes_3AL_E34DF2F08.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-110auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]