PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_D2BD92865.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 392aa MW: 43649.6 Da PI: 9.4137 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.8 | 1.1e-10 | 22 | 48 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ Traes_3AL_D2BD92865.2 22 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 48 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.2 | 2.3e-12 | 69 | 93 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Traes_3AL_D2BD92865.2 69 QPECQYYLKTGTCKFGPTCKFHHPR 93 799********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2.1e-12 | 115 | 139 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ Traes_3AL_D2BD92865.2 115 ERECAYYLKTGQCKYGNTCKFNHPE 139 799********************96 PP | |||||||
4 | zf-CCCH | 34.8 | 2.8e-11 | 276 | 301 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ Traes_3AL_D2BD92865.2 276 DQPECIYYIKTGDCKFGAVCKFHHPR 301 689*********************96 PP | |||||||
5 | zf-CCCH | 41.8 | 1.7e-13 | 321 | 347 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ Traes_3AL_D2BD92865.2 321 PGEELCKFYSRYGICKFGVNCKFDHPM 347 689**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.709 | 21 | 49 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-5 | 21 | 48 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-8 | 23 | 48 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 26 | 50 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 27 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 66 | 93 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.694 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-10 | 69 | 93 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 70 | 95 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 72 | 94 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.568 | 112 | 140 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 112 | 138 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 112 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-10 | 115 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-5 | 118 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.019 | 274 | 302 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0071 | 274 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-7 | 276 | 301 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 277 | 301 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.971 | 320 | 348 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 320 | 347 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 322 | 347 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 322 | 347 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 324 | 345 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MWQQMAMSSG ATMQSGPYPV RPGEPDCTYY LRTGLCRFGM SCRFNHPQDR NTAIASARMK 60 GEYPERVGQP ECQYYLKTGT CKFGPTCKFH HPREKAGIAG MVQLNTLGYP LRPNERECAY 120 YLKTGQCKYG NTCKFNHPEI FNAVASSRGS PIYPPVHNSG STGPHSYTGT MASWTYPRGS 180 FIPSPRWQSP SNYTPMIVPQ GLVQVPSWNS YPGQMVPVSS PESRLQSPGA QQYYGTSRQG 240 EASAGNQGMQ SSYRSSSFPA PQYALQRENV FPERPDQPEC IYYIKTGDCK FGAVCKFHHP 300 RVRSQPPPDC ILSPMGLPLR PGEELCKFYS RYGICKFGVN CKFDHPMAAP MGVYAYGXAT 360 LPPRRPMLPW LGVSWSPPPG LRTPPKARLP GI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367946 | 0.0 | AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151757.1 | 0.0 | zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A446P0B6 | 0.0 | A0A446P0B6_TRITD; Uncharacterized protein | ||||
TrEMBL | M7YT47 | 0.0 | M7YT47_TRIUA; Zinc finger CCCH domain-containing protein 12 | ||||
STRING | Traes_3AL_D2BD92865.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-143 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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