PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_CF481F6AC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 299aa    MW: 32587.1 Da    PI: 8.4514
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_CF481F6AC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.2e-13556147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                           ++rWT eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
  Traes_3AL_CF481F6AC.1  5 KQRWTSEEEAALKAGVAKHGPGKWRTILRDTDfsavlRLRSNVDLKDKWRNL 56
                           79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.562161IPR017930Myb domain
SuperFamilySSF466891.0E-14259IPR009057Homeodomain-like
SMARTSM007175.4E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-13556IPR009057Homeodomain-like
PfamPF002495.8E-9556IPR001005SANT/Myb domain
CDDcd116606.24E-18656No hitNo description
SMARTSM005266.6E-12123188IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.979125193IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.4E-15128195IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-14129196IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.4E-9130185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALKAGV AKHGPGKWRT ILRDTDFSAV LRLRSNVDLK DKWRNLSVTA  60
GGYGSREKAR MALKQGKRVP KVNTEPMDVD ADNLDNVHDT VIDAKPLAVV VEPSQRECSS  120
EKSVARLVLD DLILEAIKKL KESSGSNKTA IASYIEEQYW PPADFQRLLS TKLKALVVTG  180
KLMKSNQKYR IAPSSVSLGG RSTKVHSTED DKQNICIRQL TKPQVDAELD MMTHMNKEEA  240
AAFAAKAVAE AEVANAEAEE AARAAEAAEA EAEAAKAFLD AVMLTVQNKN AASAILRAC
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519530.0JF951953.1 Aegilops tauschii clone TaMYB70 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160049.10.0single myb histone 2-like
SwissprotB4FT401e-128SMH2_MAIZE; Single myb histone 2
TrEMBLA0A446NH740.0A0A446NH74_TRITD; Uncharacterized protein
STRINGTraes_3AL_CF481F6AC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-67telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]