PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_C97D62D50.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 567aa    MW: 63780.7 Da    PI: 9.0899
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_C97D62D50.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1618103899
                            -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                     B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             + +  + lv+p  f++++ggk    +t++le+++g++++v +  + + +r++l++GW +Fv+an+++e+ +++F++ g+++f  +v+
  Traes_3AL_C97D62D50.1  18 INGNFMHSLVIPEWFVNQFGGKI--WRTVKLESPNGNVYDVGV--TENMNRTILKSGWASFVDANKIEENYSLMFRYLGNTRF--KVT 99 
                            55556678***********9995..559***************..**********************************9999..999 PP

                            EE-S CS
                     B3  96 vfrk 99 
                            +f++
  Traes_3AL_C97D62D50.1 100 IFDS 103
                            9986 PP
2B344.13.6e-144785621499
                            T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                     B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            ++ +l k++++ h gkk + + l+l+   ++r W+ +l  r++ +r+++ kGW  F++ n+L++gD ++Fkl+++ +  +++v ++r+
  Traes_3AL_C97D62D50.1 478 ALRYLQKQYFTGHRGKK-NVISLVLQReGKSRMWDTEL--RRGIDRMMICKGWVAFARGNHLQVGDLCLFKLMESeEPLKMMVYIIRR 562
                            55688999999996664.4466888874566*******..********************************9888*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.35111104IPR003340B3 DNA binding domain
CDDcd100176.45E-1713102No hitNo description
SMARTSM010191.4E-1014104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-1814108IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-1515103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1821105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-10225316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-9226319IPR015300DNA-binding pseudobarrel domain
CDDcd100178.96E-9230321No hitNo description
SMARTSM010190.066232326IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-14443565IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-12448565IPR015300DNA-binding pseudobarrel domain
CDDcd100176.07E-14452561No hitNo description
SMARTSM010196.9E-4454563IPR003340B3 DNA binding domain
PfamPF023621.0E-11480562IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674499563IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MSDPCECCQI KLKFLRQING NFMHSLVIPE WFVNQFGGKI WRTVKLESPN GNVYDVGVTE  60
NMNRTILKSG WASFVDANKI EENYSLMFRY LGNTRFKVTI FDSSGKQKAS CCARMGTAAS  120
DVRNPSTFDV DNSSSSCGGT TQSSPSERSD SDGSQKESSY GYKKSAKKAA ISDSSEELSA  180
EDSLSRDNLV ESYDVQVHLN DYVLSGKCDL TVAQEAKIQA LVEKIRSEIP VLVVQMKKTS  240
ANFGNLIIRK DYALKYFPCE ATNIILQLPR KNKEWKCRFN PGRRNLYLGY FVHDNCVQEG  300
DICLFQPIAK VKEGRFTIIV HLLHKESVRR SPGGTAGMTH TATDRRTSAK TSLTARVKKT  360
SLTAHVKEEP ATDGEHKTTD RRTGAKTTLT SRVKEEPATD GEDTSSLRPE EDGDNSEGAS  420
ETPFVLPERA SITPAQEQKV REKVEAFEST VPVYVAILNK CNVARKSGMI ITMGKQYALR  480
YLQKQYFTGH RGKKNVISLV LQREGKSRMW DTELRRGIDR MMICKGWVAF ARGNHLQVGD  540
LCLFKLMESE EPLKMMVYII RREKCLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198702.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A3B6EPV00.0A0A3B6EPV0_WHEAT; Uncharacterized protein
STRINGTraes_3AL_C97D62D50.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-11B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]