PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_C729D25F8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 26307.7 Da PI: 7.7731 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5e-12 | 2 | 35 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ a++ +G++ W++Ia+ + gRt++ +k++w++ Traes_3AL_C729D25F8.1 2 IISAHAIHGNK-WASIAKLLV-GRTDNAIKNHWNST 35 689********.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0029 | 1 | 38 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.976 | 1 | 40 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-14 | 1 | 37 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.39E-8 | 1 | 36 | No hit | No description |
Pfam | PF00249 | 5.6E-10 | 2 | 35 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.73E-9 | 2 | 42 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MIISAHAIHG NKWASIAKLL VGRTDNAIKN HWNSTLRRRY CTGTRCTRSA SAEQPMREMS 60 RAVSEERWPL SGPSSFSVME VKEAPVQTVS ETSAGALQIR DINNCSTEAV DRSYPVRPVA 120 TVGAFRPYSL GPAQQMQMEM SSSTKFVPTI QALTPEIAVS KFADTTCFAA DVPNKCGHGC 180 CSAEEQPRNN SLLGPEFKEF IDHPPILSSS FASLVSEISS IAWMNGGLQS SNSGNLVQSN 240 PPA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN564427 | 0.0 | FN564427.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b. | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165805.1 | 1e-176 | transcription factor MYB25-like | ||||
TrEMBL | A0A3B6ENI9 | 1e-178 | A0A3B6ENI9_WHEAT; Uncharacterized protein | ||||
TrEMBL | M7Y570 | 1e-179 | M7Y570_TRIUA; Transcription factor MYB44 | ||||
STRING | Traes_3AL_C729D25F8.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8990 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 4e-33 | myb domain protein 109 |
Publications ? help Back to Top | |||
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