PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_B71F3F028.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 640aa    MW: 70829.8 Da    PI: 4.941
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_B71F3F028.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-09522570348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                            +WT  E ++lvd+v+q+G+g W+ I r        Rt  ++k++w+++l
  Traes_3AL_B71F3F028.2 522 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFasySYRTSVDLKDKWRNLL 570
                            7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.283515574IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-12516573IPR009057Homeodomain-like
SuperFamilySSF466897.01E-15517576IPR009057Homeodomain-like
SMARTSM007173.2E-9519572IPR001005SANT/Myb domain
CDDcd116608.51E-18521571No hitNo description
PfamPF002493.1E-6522570IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MEVETLQDAE ETKNGGNDFE ENGSLDPVVY QLVRVEGDGT LVPPTEDEVL QIEQFLDDKV  60
DLPSIDDVGN VEDFFTNDCM LLKEPDFEEG YSELETNGEI HTQQFDADLE VDRLKPSDDS  120
LDIPSKCTVV HDHKPDTEQG DNNIVHQDNA STETPKSTVL NDSCSAEKEK TDACSRSVNN  180
SSTGPSVSGV TSSVPDFSIL RGEVCLDNLT IRELQEAFRA TFGRETTVKD KLWLKRRITM  240
GLTNSCDVQS SGCVVKDYKI VCKDAKYELP TIGGIPKAEV EATSLVRYQV LGPGNERDTP  300
SCSYYRSEDQ QRSSNRLKGV STDNDESEGT LQDEQGAAKR LRKPTKRYIE ELSDTETLDS  360
TGKLSSPGKR VAHGEVLLRQ RVTPLQEVDS LSITYPTRKD TFGGFSVHVP YASRMRRGRP  420
RRNFISFLDD DPPVECPEVQ MAVETMLGKD GEHVNHASSA VEVPLSKNAE KKGGHIETAE  480
KKGGHIETAD NKEIHSIEPE DICRTDAKTK TKRGLKRKHH RAWTLSEVLK LVDGVAQFGP  540
GKWSEIRRLS FASYSYRTSV DLKDKWRNLL RASQTQLSPE NDGVCPRKSN PSIIPIPPAI  600
LLRVKELAEL QPQAGNLAAA IKFSGQSSKA AQGRGSSGFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519310.0JF951931.1 Triticum aestivum clone TaMYB48 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570524.10.0uncharacterized protein LOC100846611 isoform X2
TrEMBLA0A3B6EP840.0A0A3B6EP84_WHEAT; Uncharacterized protein
TrEMBLA0A446NZ880.0A0A446NZ88_TRITD; Uncharacterized protein
STRINGTraes_3AL_B71F3F028.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-81TRF-like 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]