PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_B0460F201.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 370aa    MW: 42238.1 Da    PI: 4.9079
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_B0460F201.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-0692115226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            k  lC ff   G+C+ G +CkF+H+
  Traes_3AL_B0460F201.1  92 KSILCEFFKV-GQCQKGFKCKFSHD 115
                            6779**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.83190117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-690115IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-490116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-492116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.338163201IPR000571Zinc finger, CCCH-type
SMARTSM003565.8163200IPR000571Zinc finger, CCCH-type
PfamPF165431.9E-15220299IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MPPKKAAASK ADVAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQSVQPK PDPTKTAAKK  60
KKEEEKAREK ELNDLFKVAV SQPKVPVGVD PKSILCEFFK VGQCQKGFKC KFSHDLNVQR  120
KGEKIDIYSD KRDGEEEDTM DDWDQETLEK VIASKNAEYQ QNKPTDIVCK HFLDAVEKKQ  180
YGWFWVCPNG GKECRYRHAL PPGYVLKSQM KALLEEESKK VAIEDEIEDQ RRKVQTTTPM  240
TTELFMEWKR RKAEEKEAGL AALRADRAKN DRMSGRELFM ADASVFIDDA EAYEVYERRE  300
EPQDNQEQGK KSQDEGPSSS TSNGKEADEE PDDEDLDDDD DLDLDELNEL EASLSRTSIQ  360
IREPGEGTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230251RRKVQTTTPMTTELFMEWKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507660.0AK250766.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88g07, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159449.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A3B6EN520.0A0A3B6EN52_WHEAT; Uncharacterized protein
TrEMBLA0A446NU770.0A0A446NU77_TRITD; Uncharacterized protein
STRINGTraes_3AL_B0460F201.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-145C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]