PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_A04E8A19D.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 24376.1 Da PI: 8.9849 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 94 | 184 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrw 44 +W+ E ++l++++kq + +W+ Ia++ gR++ +c srw Traes_3AL_A04E8A19D.2 94 SWSDTEKDRLAKGIKQQYQEmlikdsmkngsssgdfsavdmayaltntggnfeatpeilrsvlplvNWDYIAAMYLPGRSGAECESRW 181 699999999999999999889999999999999999999999999999999*********************99888*********** PP HHH CS Myb_DNA-binding 45 qky 47 ++y Traes_3AL_A04E8A19D.2 182 LNY 184 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.33 | 87 | 185 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-7 | 92 | 124 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-7 | 160 | 210 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00996 | 160 | 184 | No hit | No description |
SuperFamily | SSF46689 | 1.27E-9 | 166 | 212 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MINIEAKIEV NKDLRDRVKC LMDYQLSCRR SFSNFLCHKV DPRVRLISSK KQTAQSAMNK 60 CKMSPLLLGP AENPHIEKYK VVLKQFPMSL QKHSWSDTEK DRLAKGIKQQ YQEMLIKDSM 120 KNGSSSGDFS AVDMAYALTN TGGNFEATPE ILRSVLPLVN WDYIAAMYLP GRSGAECESR 180 WLNYDNPLIN HNAWTACEEK RLILTVQEKG MHN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368554 | 0.0 | AK368554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150877.1 | 1e-133 | uncharacterized protein LOC109736068 | ||||
TrEMBL | A0A3B6EUQ4 | 1e-160 | A0A3B6EUQ4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AL_A04E8A19D.2 | 1e-160 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 4e-50 | myb domain protein 4r1 |
Publications ? help Back to Top | |||
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