PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_861C1D473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 710aa MW: 83421.9 Da PI: 8.4204 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.7 | 9.1e-24 | 20 | 111 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fYn+YA e GFsvrk + + + n++i+ r++vCs eg ree++ k ++++r++r+ tr+gCkak+++ + +g+w v+++ e Traes_3AL_861C1D473.1 20 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCSHEGCREEKHMKrkrEDRKRKPRNITRVGCKAKFVIARVAkTGRWFVKDFIDE 107 6*****************************************99988777889999***************99988************ PP FAR1 85 HnHe 88 HnH+ Traes_3AL_861C1D473.1 108 HNHP 111 ***7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-21 | 20 | 111 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.8E-35 | 235 | 329 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.977 | 513 | 552 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MAEYDDIVSK MFDSEEEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCSHEGCR 60 EEKHMKRKRE DRKRKPRNIT RVGCKAKFVI ARVAKTGRWF VKDFIDEHNH PPAPRDLACF 120 LRSHRRISDK QKTDIIEMES VGIRKHKIMD VLCMQYGGYD HVGCMTRDIY NFCHRYKQET 180 VAAGDAQMVI RHMMARQERD PDYFFKYLVD KDGHLKGLFW SDTQSRLDYE AFGDVVVFDS 240 TYRTNKYNLP FVPFVGLNHH RSTVIFGCGI ISHETNEVYE WMLQTFSEAM SQKHPISVIT 300 DGNLAMQRAI RMVWPDSYHR LCVWHIQQNI VRHLHDDEVR EEFRSFIYDS SSIEEHERKW 360 IEFLRRNEVT SEESWLHQMY QMRKLWCAPY LVGRCFLGLS SNQRSESLNS MLHTHLEGKM 420 TLFDMLEHYE CCLSGRRLNE AILDIVALQS IPFTDADASS LEKHVVRVFT PCMFQLVRWS 480 INAVSKCVIS EILDAWELTT YVVAKIDRRE KKFEVRCEMK EGSLYRISCS CRKLECLGTP 540 CSHIFYILGI RQVEVLPRCC VPMRWTMSAK SAFPPTRKSE MYDYSASLVR YRELRNLSHV 600 ACFRACQSSE EYQRLKMILS EQVGSKESSR GQEECIRFGP VLPQTTEIDC GDLEKVLDPV 660 HVQGRGAPKK RLQAKMKKQR SKRKCGYCGV EGHDRRTCNK LKEVSNMSNF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 74 | KREDRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150962.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453MVW8 | 0.0 | A0A453MVW8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3AL_861C1D473.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-94 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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