PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_8260356E3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 58aa MW: 7065.13 Da PI: 10.1076 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.6 | 7.6e-12 | 5 | 42 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Traes_3AL_8260356E3.1 5 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 42 554459******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 1 | 50 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-4 | 1 | 50 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-16 | 2 | 52 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.5E-21 | 3 | 42 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 1.84E-10 | 4 | 47 | No hit | No description |
PROSITE profile | PS50071 | 12.001 | 5 | 46 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 21 | 44 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
RGWLFEHFLH PYPTDGDKQM LAKQTGLTRN QVSNWFINAR VRLWKPMVEE IHNLEMRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 1 | 50 | 14 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 1 | 50 | 14 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-16 | 1 | 50 | 14 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 1 | 50 | 14 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-16 | 1 | 50 | 10 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-16 | 1 | 50 | 10 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB546647 | 2e-80 | AB546647.1 Triticum aestivum WBLH4 mRNA for BEL1-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688150.1 | 7e-36 | PREDICTED: BEL1-like homeodomain protein 9, partial | ||||
Swissprot | Q9SJJ3 | 2e-30 | BLH8_ARATH; BEL1-like homeodomain protein 8 | ||||
TrEMBL | A0A0D3EW88 | 2e-34 | A0A0D3EW88_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0JR12 | 2e-34 | A0A0E0JR12_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A1D6N756 | 1e-34 | A0A1D6N756_MAIZE; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A453FXH1 | 6e-35 | A0A453FXH1_AEGTS; Uncharacterized protein | ||||
STRING | OS01T0848400-01 | 2e-35 | (Oryza sativa) | ||||
STRING | OPUNC01G36100.1 | 4e-35 | (Oryza punctata) | ||||
STRING | Traes_3AL_8260356E3.1 | 3e-37 | (Triticum aestivum) | ||||
STRING | OBART01G37260.1 | 3e-35 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 9e-33 | BEL1-like homeodomain 8 |
Publications ? help Back to Top | |||
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