PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_825A1B8BD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 129aa    MW: 15026.2 Da    PI: 11.0092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_825A1B8BD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66.1e-132371147
                           HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Traes_3AL_825A1B8BD.1  2 KLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 37
                           799*******************.***********996 PP
2Myb_DNA-binding551.8e-174587246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Traes_3AL_825A1B8BD.1 45 RPFSDEEEERLMAAHRFYGNK-WSMIARLFP-GRTDNAVKNHWHV 87
                           68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0011140IPR001005SANT/Myb domain
PROSITE profilePS5129415.677138IPR017930Myb domain
PfamPF002493.2E-12237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-21245IPR009057Homeodomain-like
CDDcd001671.88E-9236No hitNo description
SuperFamilySSF466893.25E-261897IPR009057Homeodomain-like
PROSITE profilePS5129424.9583993IPR017930Myb domain
SMARTSM007175.5E-134391IPR001005SANT/Myb domain
PfamPF002491.5E-134486IPR001005SANT/Myb domain
CDDcd001672.85E-104686No hitNo description
Gene3DG3DSA:1.10.10.603.1E-214692IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MKLRELVALY GPQNWNLIAE KLDGRSGKSC RLRWFNQLDP RISKRPFSDE EEERLMAAHR  60
FYGNKWSMIA RLFPGRTDNA VKNHWHVIMA RKYREQSIAY RRRKLNQAVQ RTLDSSSGVA  120
AGAGHVDVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-3029217107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-153HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184298.16e-88transcription factor MYB21-like
SwissprotQ9SEZ42e-62MY105_ARATH; Transcription factor MYB105
TrEMBLA0A446P1B81e-90A0A446P1B8_TRITD; Uncharacterized protein
STRINGTraes_3AL_825A1B8BD.12e-92(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.11e-64myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]