PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_3AL_7FD4FF43C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 186aa MW: 20831 Da PI: 8.4799 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.4e-09 | 5 | 31 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+ +tG C yG +C+F+H++ Traes_3AL_7FD4FF43C.1 5 PGEVDCSFYIKTGSCMYGRTCRFNHPE 31 57899********************96 PP | |||||||
2 | zf-CCCH | 35.4 | 1.8e-11 | 75 | 99 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ ++CkF+H+ Traes_3AL_7FD4FF43C.1 75 GETVCDFYKKTGFCKFSEKCKFHHP 99 6789********************9 PP | |||||||
3 | zf-CCCH | 40.6 | 4.3e-13 | 132 | 155 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p Traes_3AL_7FD4FF43C.1 132 EACAYYMKTGACKFGVQCKFDHPP 155 78********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.2E-4 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.385 | 4 | 32 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 6 | 31 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 9 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 10 | 31 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-7 | 72 | 101 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-6 | 73 | 100 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.164 | 73 | 101 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-9 | 75 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-6 | 78 | 99 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-6 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.601 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-6 | 131 | 154 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 132 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 132 | 153 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
MPIRPGEVDC SFYIKTGSCM YGRTCRFNHP ERHIQASVVP GEMLNPAVKF LPSFDFRVTH 60 VPIEPEPITY PQRPGETVCD FYKKTGFCKF SEKCKFHHPV DRSAPDSIAK WEPSQQPVTL 120 TVAGFPRRED AEACAYYMKT GACKFGVQCK FDHPPLGEAI AKVSKHGEGK EGGKKKVVGL 180 SYVLEN |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK251631 | 0.0 | AK251631.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200959.1 | 1e-121 | zinc finger CCCH domain-containing protein 8 isoform X2 | ||||
Swissprot | Q5ZDJ6 | 7e-77 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A453F1U5 | 1e-123 | A0A453F1U5_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453F232 | 1e-123 | A0A453F232_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453F268 | 1e-124 | A0A453F268_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3AL_7FD4FF43C.1 | 1e-136 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 3e-54 | floral homeotic protein (HUA1) |
Publications ? help Back to Top | |||
---|---|---|---|
|