PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_7C031019E.1
Common NameTRAES_3BF016200140CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 112aa    MW: 12730.5 Da    PI: 10.3223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_7C031019E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.5e-141462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W+ eEd  l + v+++ +  +W t +++ g++R++k+c++rw++yl
  Traes_3AL_7C031019E.1 14 RGPWSREEDAVLRNFVQRFANAgNWITLPQKAGLNRCGKSCRLRWLNYL 62
                           89******************999*************************7 PP

2Myb_DNA-binding44.73e-1469111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +T+eEd l++ +    G++ W+ Ia++++ gRt++++k++w++
  Traes_3AL_7C031019E.1  69 GGFTEEEDSLILSLYGDIGSR-WSVIAAKLP-GRTDNDVKNHWNT 111
                            569******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.801962IPR017877Myb-like domain
SuperFamilySSF466891.0E-2711109IPR009057Homeodomain-like
SMARTSM007178.8E-81364IPR001005SANT/Myb domain
PfamPF002497.6E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-211569IPR009057Homeodomain-like
CDDcd001671.19E-51662No hitNo description
PROSITE profilePS5129419.26263112IPR017930Myb domain
SMARTSM007171.5E-667112IPR001005SANT/Myb domain
PfamPF002491.0E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2070111IPR009057Homeodomain-like
CDDcd001671.08E-971111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MGRSPCCDKA SVKRGPWSRE EDAVLRNFVQ RFANAGNWIT LPQKAGLNRC GKSCRLRWLN  60
YLRPALRHGG FTEEEDSLIL SLYGDIGSRW SVIAAKLPGR TDNDVKNHWN TK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25141117102B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-67HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157086.12e-77transcription factor RAX2-like
SwissprotQ9FKL28e-61MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A3B6EJE68e-78A0A3B6EJE6_WHEAT; Uncharacterized protein
TrEMBLA0A446NP088e-78A0A446NP08_TRITD; Uncharacterized protein
STRINGTraes_3B_2D2135570.18e-80(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-63myb domain protein 36
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]