PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_64D802655.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 330aa MW: 35681.2 Da PI: 8.2006 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00026 | 202 | 239 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A eYIk L Traes_3AL_64D802655.2 202 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEANEYIKFL 239 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.874 | 190 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-7 | 200 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-10 | 200 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.35E-4 | 200 | 244 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MDWTHAFLSG RSDASFQAVL QDDMPASMTT RPLFRAHQPA VDEAVMSNPF RDMSHSFSLL 60 DQVPAASSPY GTAPLQGMFD NAGASRNVSV LGECQSSTSY DGTAAMQLNQ AATQMLGGGA 120 QLQYLSGSGG YLPFGGAPLS SQLLLQALQP KTSYSSSSNT LMAKFAEHAC SPPVRRSEPD 180 SPAAAKRPRI EAPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH EANEYIKFLH 240 DQVASLTYPY LKNVNPLQQF QQKGSENAKD DGGEPKKDLR SRGLCLVPVA TTYTVASETV 300 PEFWYPTFGG TFRLQTNTVL RLKQSKGACC |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181117.1 | 0.0 | transcription factor UNE12-like isoform X2 | ||||
TrEMBL | A0A3B6EJL8 | 0.0 | A0A3B6EJL8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AL_64D802655.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 5e-47 | bHLH family protein |
Publications ? help Back to Top | |||
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