PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_60B6CD0A5.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 413aa    MW: 47296.2 Da    PI: 9.7441
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_60B6CD0A5.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.72.9e-115384072374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL++cA+ vs +d + a+ lL++++++as +gd  qRla++f+++L+arla+++s++yk  + s+ +    +++l+a++l+  ++P
  Traes_3AL_60B6CD0A5.2  38 ETLLIHCAQSVSIDDRRSATDLLKQIRQHASATGDGDQRLAHCFANGLEARLAGNGSQIYKLHTISRFA---CTDVLKAYQLYLAACP 122
                            789**********************************************************99999999...9*************** PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175
                            + k+sh  aNq+I++ave++++vHi+Df++ +G+QWp+L+q L++R +gpp+lRiT+++ p++g   +e++ee+g+ L+++A++++vp
  Traes_3AL_60B6CD0A5.2 123 FKKISHYFANQTIMNAVEKAKKVHIVDFGVYYGFQWPCLIQRLSKRLGGPPELRITAIDTPQPGfrPAERIEEIGRYLSDYAQTFKVP 210
                            **************************************************************************************** PP

                   GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                            f+++  +a+++e++++e+L+++++E l+Vn++++ ++l+desv  es+r+ vL+++++++P+v+++   + ++n++ F+ rf eal  
  Traes_3AL_60B6CD0A5.2 211 FKYHG-IASQFEAVRVEDLHIEKDEILIVNSMFRFKTLMDESVVAESPRNMVLNTIRKMKPHVFIHGVTNGSYNAPFFVSRFREALFQ 297
                            *****.7********************************************************************************* PP

                   GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                            +sa fd+lea++pr++eer  +E  +++re+ nv++ceg er er et+++W+ r ++aGFk++pl+ +++k a+  ++ ++++ + +
  Traes_3AL_60B6CD0A5.2 298 FSAHFDMLEANIPRDNEERLLIESTIFSREAINVISCEGMERMERPETYKQWQVRNQRAGFKQLPLDPEIMKRAREKVKCYHKN-FII 384
                            *******************************************************************************99966.*** PP

                   GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                            +e++ +l++gWk+r L+++S W+
  Traes_3AL_60B6CD0A5.2 385 DEDNRWLLQGWKGRILYALSTWK 407
                            **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.18911388IPR005202Transcription factor GRAS
PfamPF035141.0E-11238407IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
QHDVAAHSGG AHGKGSGHGK GRGKKQVKQP KKEVVDLETL LIHCAQSVSI DDRRSATDLL  60
KQIRQHASAT GDGDQRLAHC FANGLEARLA GNGSQIYKLH TISRFACTDV LKAYQLYLAA  120
CPFKKISHYF ANQTIMNAVE KAKKVHIVDF GVYYGFQWPC LIQRLSKRLG GPPELRITAI  180
DTPQPGFRPA ERIEEIGRYL SDYAQTFKVP FKYHGIASQF EAVRVEDLHI EKDEILIVNS  240
MFRFKTLMDE SVVAESPRNM VLNTIRKMKP HVFIHGVTNG SYNAPFFVSR FREALFQFSA  300
HFDMLEANIP RDNEERLLIE STIFSREAIN VISCEGMERM ERPETYKQWQ VRNQRAGFKQ  360
LPLDPEIMKR AREKVKCYHK NFIIDEDNRW LLQGWKGRIL YALSTWKANP QSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-49414078375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188125.10.0scarecrow-like protein 9
SwissprotO809331e-168SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A446NVY50.0A0A446NVY5_TRITD; Uncharacterized protein
TrEMBLA0A446NW980.0A0A446NW98_TRITD; Uncharacterized protein
STRINGTraes_3AL_60B6CD0A5.20.0(Triticum aestivum)
STRINGTRIUR3_23165-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-168GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]