PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_561A00448.1
Common NameETT2-alpha
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 537aa    MW: 59650.4 Da    PI: 8.4822
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_561A00448.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.85e-245106199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F
  Traes_3AL_561A00448.1   5 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyNLQRP-SQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLF 91 
                            99****************************9966654.569*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++ l ++v+r+
  Traes_3AL_561A00448.1  92 L--RGEDGVLQLGVRRA 106
                            *..34889899999986 PP
2Auxin_resp105.94.6e-35131211182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            +aha+++ks+F+++YnPr ++seF+v+++k+++++++++svGmRfkm++e+ed+serr +G+++g +++d  + ++SkW++L
  Traes_3AL_561A00448.1 131 VAHAVAMKSIFHIYYNPRLCESEFIVPYWKFMRSFSQPFSVGMRFKMKYENEDASERRSTGMITGSRESDL-KSHGSKWKCL 211
                            79******************************************************************776.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-392108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-223105No hitNo description
SuperFamilySSF1019361.96E-413116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3385107IPR003340B3 DNA binding domain
PfamPF023627.6E-225106IPR003340B3 DNA binding domain
SMARTSM010196.6E-225107IPR003340B3 DNA binding domain
PfamPF065071.2E-28131211IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNLQR PSQELVAKDL HGTEWRFRHI  60
YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGEDGVLQ LGVRRAAQLK NVSPFPALFN  120
QDSSLRSLGN VAHAVAMKSI FHIYYNPRLC ESEFIVPYWK FMRSFSQPFS VGMRFKMKYE  180
NEDASERRST GMITGSRESD LKSHGSKWKC LVVRWDDDVE CRRLNRVSPW EIELAGSVSG  240
SHLSSPHSKR LKPCLPQVNP DMLLPSGSVS SDFAESARFH KVLQGQELLG SKAHDGTVNS  300
ASEASQASEA RNFQYSDDRN CSINMCNIPG VPGLGARTPP ENHGFSYHCS GFGESQRFQK  360
VLQGQEVFGP YEGGTLSDAV IRGSSFCQPD GNYTSRATYK WLMSQGCDYR GPVTPAMPQA  420
SSPLSVLMFP QTSSKIHGFE YVCRSLDKDD NIRHVTINAT QDMGRTSHTL PLWPRLVSGK  480
AVASCAGTKK LPSIGSAEHE PNDKDVHTNG CKIFGISLTQ KVRVCDEVEC SSANCDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A5e-823241122361Auxin response factor 1
4ldy_B5e-823241122361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761290.0AY376129.1 Triticum aestivum ETTIN-like auxin response factor (ETT2-alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160562.10.0auxin response factor 2-like isoform X2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLQ6U8C70.0Q6U8C7_WHEAT; Auxin response factor (Fragment)
STRINGTraes_3AL_561A00448.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-118ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]