PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_531BE8073.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 90aa    MW: 10351.3 Da    PI: 8.6265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_531BE8073.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.5e-0710511055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           + RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Traes_3AL_531BE8073.1 10 QVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 51
                           57******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.683150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-7656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-13965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-131062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-41151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-61255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MPCFVLCCAQ VRREKISQRM KLLQDLVPGC NKVVGKAVML DEIINYVQSL QRQVEVHARP  60
HCQPKTDHEL PSETLVAIRV NFCLQFLSMK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546284e-55AK354628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009E13.
GenBankAK3619384e-55AK361938.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621926.18e-23transcription factor bHLH77 isoform X1
RefseqXP_015688052.18e-23PREDICTED: transcription factor bHLH77 isoform X1
RefseqXP_020155799.18e-23transcription factor bHLH77-like isoform X1
RefseqXP_020155800.18e-23transcription factor bHLH77-like isoform X2
SwissprotQ9CAA93e-22BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A453GAJ52e-30A0A453GAJ5_AEGTS; Uncharacterized protein
STRINGTraes_3AL_531BE8073.13e-60(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-24bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]