PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_48A1E60D0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 120aa    MW: 13752.8 Da    PI: 8.2215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_48A1E60D0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.4e-141593799
                           EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           +l+ ++g++W v+l  +k ++ ++lt+GW +Fv +n L+e +f++F++d++++f  +v+vf +
  Traes_3AL_48A1E60D0.1  1 MLKRSEGKTWVVEL--EKVDCCVFLTTGWTKFVVDNSLREYEFLLFRHDRKMDF--MVSVFGR 59
                           58899*********..*******************************9999999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.408160IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-14262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16266IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-11259IPR003340B3 DNA binding domain
CDDcd100172.81E-11257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MLKRSEGKTW VVELEKVDCC VFLTTGWTKF VVDNSLREYE FLLFRHDRKM DFMVSVFGRN  60
ACEKAVRSSG SAAQATESLE RKLPCDMFPT CKRGHSGDEL TKITNNLRQS HSLVMIPDQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-93HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165473.11e-73B3 domain-containing protein Os03g0120900-like
SwissprotQ5JNA14e-39Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A3B6EI703e-79A0A3B6EI70_WHEAT; Uncharacterized protein
TrEMBLA0A3B6EJD02e-79A0A3B6EJD0_WHEAT; Uncharacterized protein
TrEMBLT1M2Q12e-79T1M2Q1_TRIUA; Uncharacterized protein
STRINGTraes_3AL_48A1E60D0.11e-85(Triticum aestivum)
STRINGTRIUR3_11727-P14e-80(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.15e-12B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]