PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_41AC2099E1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 31539.2 Da PI: 9.6238 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.4 | 2.5e-35 | 45 | 187 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 p+G++F+Ptd+el+ e+L+ kv ++ ++l + +i+ +i++++P++Lp v+ + ++ +fF++ +k+y+tg+rk+r+ Traes_3AL_41AC2099E1.2 45 PAGVKFDPTDQELI-EHLESKVMKRAHSLIDdfipTIEGEdGICYTHPEKLP-GVTRNGQSKHFFHRPSKAYTTGTRKRRKihaete 129 89************.99*****99996654423223555545**********.555667899******************8789988 PP NAM 78 ......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk++++++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Traes_3AL_41AC2099E1.2 130 lsnsknGAETRWHKTGKTRPLMV-GGQHKGCKKILVLYinFGKTRKAEKTNWVMHQYHL 187 88866544678************.99************766899*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-35 | 36 | 206 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.804 | 44 | 206 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-16 | 45 | 187 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MDKGHPGYSK YMIDAKLQEQ GFFASQHCAN CGHELHHKPD MVGFPAGVKF DPTDQELIEH 60 LESKVMKRAH SLIDDFIPTI EGEDGICYTH PEKLPGVTRN GQSKHFFHRP SKAYTTGTRK 120 RRKIHAETEL SNSKNGAETR WHKTGKTRPL MVGGQHKGCK KILVLYINFG KTRKAEKTNW 180 VMHQYHLGDL EDEKEGELIV SKVFYQTQPR QTAAATTSTV LREPSTNGNM EVKMPKSMKI 240 GLTDHAVAAA AAIQMQRQQQ QLLKQGLCKV DICWLIHAL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN564430 | 0.0 | FN564430.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b. | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156234.1 | 1e-175 | NAC domain-containing protein 73-like | ||||
Refseq | XP_020156242.1 | 1e-175 | NAC domain-containing protein 73-like | ||||
Swissprot | Q9M0F8 | 1e-106 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A3B6ELU5 | 0.0 | A0A3B6ELU5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AL_41AC2099E.2 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_3AL_41AC2099E1.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 3e-93 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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