PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_386795528.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 555aa    MW: 61479.9 Da    PI: 8.6294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_386795528.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161763148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g WT +Ede l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Traes_3AL_386795528.1 17 KGGWTSQEDETLRKAVETFNGRSWKKIAEFFP-DRTEVQCLHRWQKVL 63
                           688*****************************.************986 PP
2Myb_DNA-binding63.73.5e-2069115148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+WT+eEd++++d+vk++G+  W+ Iar ++ gR +kqc++rw+++l
  Traes_3AL_386795528.1  69 KGPWTQEEDDKIIDLVKKYGPTKWSVIARSLP-GRIGKQCRERWHNHL 115
                            79******************************.*************97 PP
3Myb_DNA-binding60.63.3e-19121164146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +++WT+eE++ l++a++++G++ W+ Ia+ ++ gRt++++k++w++
  Traes_3AL_386795528.1 121 KDAWTAEEEQALINAHREYGNK-WAEIAKVLP-GRTDNSIKNHWNS 164
                            679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8341263IPR017930Myb domain
SMARTSM007177.6E-141665IPR001005SANT/Myb domain
PfamPF002491.0E-141763IPR001005SANT/Myb domain
SuperFamilySSF466892.8E-151873IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-211975IPR009057Homeodomain-like
CDDcd001672.11E-122063No hitNo description
PROSITE profilePS5129431.78364119IPR017930Myb domain
SuperFamilySSF466891.36E-3266162IPR009057Homeodomain-like
SMARTSM007178.5E-1968117IPR001005SANT/Myb domain
PfamPF002491.6E-1869115IPR001005SANT/Myb domain
CDDcd001679.50E-1771115No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2776122IPR009057Homeodomain-like
PROSITE profilePS5129424.45120170IPR017930Myb domain
SMARTSM007171.3E-18120168IPR001005SANT/Myb domain
PfamPF002491.7E-17121164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-25123170IPR009057Homeodomain-like
CDDcd001673.34E-15123166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
QKLTYIRRTS GPIRRAKGGW TSQEDETLRK AVETFNGRSW KKIAEFFPDR TEVQCLHRWQ  60
KVLNPELIKG PWTQEEDDKI IDLVKKYGPT KWSVIARSLP GRIGKQCRER WHNHLNPDIR  120
KDAWTAEEEQ ALINAHREYG NKWAEIAKVL PGRTDNSIKN HWNSSLRKKL DVYGTRNILA  180
IPRLVGHDDF KDKQKSLASE GHLDLNTVPG ITSKNLPEIA HHSNFSSHLQ SYKLDHAKDR  240
SGFLSISFLP TVQPLTSYEV SSVVNGSAVT SAAQGLESDS VRDKGLEIIS VHEKGLKVDS  300
TLDTLGEPDS TQLDAVPAKG EESSLKNDAQ SSLGPLCYQI PNMNDVAPAS SSLISEHQTV  360
HQTSEHCRNG ALSPNGCTTP TKGTMSVQLS VDSILKIAAD SFPVTPSILR RRKRERPTPA  420
SDLKFSEPNT DSFYTPAGKH PATDTPESFR TASFLSLGSL DGLSSSARGF DVSPPYRIRA  480
KRMCLTKSVE KQLDFSSNGL GTCGSEVLNS PQQNSQSTHS LGEASIMKEK ELNGHVTQLE  540
TSTKNITYTT NMDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-73161705159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-73161705159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2364940.0HQ236494.1 Triticum aestivum MYB3R transcription factor (MYB3R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192352.10.0myb-related protein B-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A3B6ENC00.0A0A3B6ENC0_WHEAT; Uncharacterized protein
TrEMBLA0A446NVV60.0A0A446NVV6_TRITD; Uncharacterized protein
STRINGTraes_3AL_386795528.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-107myb domain protein 3r-5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]