PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_29AD9D378.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 83aa MW: 9406.89 Da PI: 8.8399 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.6 | 7e-07 | 29 | 65 | 1 | 38 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske 38 +fYn Y+ e+GF vr +ks+ + + + +++fvC + Traes_3AL_29AD9D378.2 29 EFYNLYSWEMGFGVRYAKSRLNVHRK-KCMQEFVCACA 65 6*****************99995555.77899***875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MRAYAENKGG TVVNPSLGTS FDTVEEAYEF YNLYSWEMGF GVRYAKSRLN VHRKKCMQEF 60 VCACAVSMVL GNKMRLTLSI GHL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 4e-70 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231466.1 | 6e-31 | uncharacterized protein LOC104582684 isoform X1 | ||||
TrEMBL | A0A446NNI2 | 1e-55 | A0A446NNI2_TRITD; Uncharacterized protein | ||||
STRING | Traes_3AL_29AD9D378.2 | 2e-56 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 2e-08 | FAR1-related sequence 12 |
Publications ? help Back to Top | |||
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