PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_1D19F288D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28555.4 Da PI: 5.128 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.3 | 1.9e-15 | 34 | 129 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 +k+l +sd +++gr+vlpkk e++ ++ ++ l++ d ++ + W++k++y ++ks++yvl+ ++ ++v+ ++L++gDf+++ Traes_3AL_1D19F288D.1 34 QKELRNSDISQLGRIVLPKKESEAYlpilT--SKDGRSLRMHDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHNLRVGDFIMI 118 79999**********************653..445678*****8888*********89999999**99.******************* PP EE-SSSEE..EE CS B3 83 kldgrsefelvv 94 + d++ + ++v+ Traes_3AL_1D19F288D.1 119 YKDDD-KNRFVI 129 *5554.433344 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-18 | 32 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-22 | 32 | 133 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 32 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.6E-11 | 33 | 135 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.291 | 33 | 135 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-12 | 34 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
AIYFPLVEAV NELDLNRVAL DPNHQVAGLR VILQKELRNS DISQLGRIVL PKKESEAYLP 60 ILTSKDGRSL RMHDLLNAQL WTFKYRYWPN NKSRMYVLEN TGDYVRTHNL RVGDFIMIYK 120 DDDKNRFVIR AKKAGDDLVA SLPQFHEHIS SILPIPEVDD YVSLIPPPAD ISAFAPQADE 180 NYEMFDGIFN SLPEIPVANV RYSDFFDPFS DCMDMSNPGL NANNSANLAS HFHDERTGLS 240 LFPNPKSGPL M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 7e-43 | 29 | 137 | 1 | 109 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 7e-43 | 29 | 137 | 1 | 109 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375142 | 0.0 | AK375142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3086F07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179453.1 | 1e-177 | B3 domain-containing protein LFL1-like | ||||
Swissprot | A4LBC0 | 1e-116 | LFL1_ORYSJ; B3 domain-containing protein LFL1 | ||||
TrEMBL | A0A3B6EJ75 | 1e-178 | A0A3B6EJ75_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AL_1D19F288D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8091 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 5e-43 | B3 family protein |
Publications ? help Back to Top | |||
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