PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_1ADA4B536.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 551aa    MW: 59822.5 Da    PI: 5.4827
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_1ADA4B536.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-06313335225
                            -S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                            k ++C +far G C  Gd C++ H
  Traes_3AL_1ADA4B536.1 313 KSKPCTHFAR-GSCLKGDDCPYDH 335
                            6789******.************* PP

2zf-CCCH22.32.3e-07341362526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f ++G C +Gd+CkF+H+
  Traes_3AL_1ADA4B536.1 341 PCHNFVENGMCFRGDKCKFSHV 362
                            7********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.169281309IPR000571Zinc finger, CCCH-type
SMARTSM003561.4282308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4310336IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5311337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281311338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5313336IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037339363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6340363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864341364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4341361IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4341362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MEHQVAGVQR AEGVTDMVVG GNLCRETVAL VEELGAEDVL RSMKDCLEGE VDELAEPDVM  60
VVNDDEHLLL DTMMTNFSGL IADASGGKAS MLNYGVSGGE PHNDGNIAEG VKELGAGTEE  120
DRPVGDSDQH SVDGGVVEEG EIEGDMQALD VDESDDSEIE DADDEELGED FANRVLGENE  180
SSGLSTPKIK GTSDLVLNKE GYIKDDALKH VTRAHVVSYD EIVEWNETPL PDTEAPKPGK  240
RKRHLTEERK AKKTKNKRVK RAQQRIADGV KRLKLAPVIK PKPVKLCHFY MHGKCQQQGN  300
ACKFSHDTTP LTKSKPCTHF ARGSCLKGDD CPYDHELSKY PCHNFVENGM CFRGDKCKFS  360
HVVPTADGPP KPDAKKSDAS LVSEKPGREQ TSSQKASADH DGEHITSAPT KHYSILKNLA  420
GISVNALKAS TGTPKGVQFR PSSKDRSNSS MLHQDALPIE KHMYTNGSKH QNFDGPQAAE  480
GDKNAIPNKQ RSHPLFDEKN SLKEASSHPS SDPKRTSLPT GSTTVLGSLS TQHEVSEASR  540
ILQEFLFGAG G
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658510.0AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184316.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184317.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184318.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184319.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184320.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A3B6EF930.0A0A3B6EF93_WHEAT; Uncharacterized protein
STRINGTraes_3AL_1ADA4B536.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-07C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]