PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_1ADA4B536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 551aa MW: 59822.5 Da PI: 5.4827 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.8e-06 | 313 | 335 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C +far G C Gd C++ H Traes_3AL_1ADA4B536.1 313 KSKPCTHFAR-GSCLKGDDCPYDH 335 6789******.************* PP | |||||||
2 | zf-CCCH | 22.3 | 2.3e-07 | 341 | 362 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f ++G C +Gd+CkF+H+ Traes_3AL_1ADA4B536.1 341 PCHNFVENGMCFRGDKCKFSHV 362 7********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.169 | 281 | 309 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4 | 282 | 308 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 310 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 311 | 337 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.281 | 311 | 338 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 313 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0037 | 339 | 363 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 340 | 363 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.864 | 341 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-4 | 341 | 361 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-4 | 341 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MEHQVAGVQR AEGVTDMVVG GNLCRETVAL VEELGAEDVL RSMKDCLEGE VDELAEPDVM 60 VVNDDEHLLL DTMMTNFSGL IADASGGKAS MLNYGVSGGE PHNDGNIAEG VKELGAGTEE 120 DRPVGDSDQH SVDGGVVEEG EIEGDMQALD VDESDDSEIE DADDEELGED FANRVLGENE 180 SSGLSTPKIK GTSDLVLNKE GYIKDDALKH VTRAHVVSYD EIVEWNETPL PDTEAPKPGK 240 RKRHLTEERK AKKTKNKRVK RAQQRIADGV KRLKLAPVIK PKPVKLCHFY MHGKCQQQGN 300 ACKFSHDTTP LTKSKPCTHF ARGSCLKGDD CPYDHELSKY PCHNFVENGM CFRGDKCKFS 360 HVVPTADGPP KPDAKKSDAS LVSEKPGREQ TSSQKASADH DGEHITSAPT KHYSILKNLA 420 GISVNALKAS TGTPKGVQFR PSSKDRSNSS MLHQDALPIE KHMYTNGSKH QNFDGPQAAE 480 GDKNAIPNKQ RSHPLFDEKN SLKEASSHPS SDPKRTSLPT GSTTVLGSLS TQHEVSEASR 540 ILQEFLFGAG G |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365851 | 0.0 | AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184316.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184317.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184318.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184319.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184320.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Swissprot | Q657B3 | 0.0 | C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A3B6EF93 | 0.0 | A0A3B6EF93_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AL_1ADA4B536.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8838 | 37 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 3e-07 | C3H family protein |
Publications ? help Back to Top | |||
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