PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_152A7186A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 387aa    MW: 42737 Da    PI: 8.6811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_152A7186A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.9e-1989134147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg+WT+eEdell ++v ++G + W+tI+++++ gR +kqc++rw ++
  Traes_3AL_152A7186A.1  89 RGPWTEEEDELLRRLVDEHGEHKWATISEHLP-GRIGKQCRERWTNH 134
                            89******************************.***********997 PP
2Myb_DNA-binding513.3e-16145184445
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            WT+ +d  l+da+k +G++ W++Iar+++ gR+++ +k++w+
  Traes_3AL_152A7186A.1 145 WTEADDIMLIDAHKVHGNR-WSSIARCLP-GRSENAVKNHWN 184
                            *******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.04286139IPR017930Myb domain
SuperFamilySSF466892.7E-3088183IPR009057Homeodomain-like
SMARTSM007171.3E-1888137IPR001005SANT/Myb domain
PfamPF002491.9E-1889134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2389137IPR009057Homeodomain-like
CDDcd001673.80E-1791135No hitNo description
Gene3DG3DSA:1.10.10.607.0E-18138188IPR009057Homeodomain-like
PROSITE profilePS5129415.944140191IPR017930Myb domain
SMARTSM007175.2E-14141189IPR001005SANT/Myb domain
PfamPF002492.4E-13145184IPR001005SANT/Myb domain
CDDcd001674.29E-13145187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
SHVGGRARQV RKVHPEPCPW FSPLPASWQR SGRIPRHGIA RFRLGHASLH LPEGTHAAAG  60
YGAEAVPVEI PVVRRQRPAA KNDGATPFRG PWTEEEDELL RRLVDEHGEH KWATISEHLP  120
GRIGKQCRER WTNHVRPGIK KEHIWTEADD IMLIDAHKVH GNRWSSIARC LPGRSENAVK  180
NHWNATKRSL KSKRRFKKKT SQQAAPGQFT LLEEYIRDKM MADENVAPPS PSAGVAYDGQ  240
IVPCAAAMLA VSSPHGMGQY LHPANAAGSS SQAGMMNLSV PLPDLNAYSG EMLERYYYPT  300
YSNNLLPYGP EPAFPQMFSA QGRMHAACTN LNLFPLPQHP GGGYYGSETG RSSAGGSSNQ  360
DEDVAQMASR EFQTSEDEAT LDLTGFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-36891867103B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163979.10.0uncharacterized protein LOC109749424
TrEMBLA0A3B6ELH30.0A0A3B6ELH3_WHEAT; Uncharacterized protein
STRINGTraes_3AL_152A7186A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.16e-33myb domain protein 118
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]