PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_12B53AB09.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 288aa    MW: 31843.4 Da    PI: 9.1294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_12B53AB09.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.1e-12556147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                           +++WT eE+e l ++v ++G g W+tI +          R+  ++k++w+++
  Traes_3AL_12B53AB09.2  5 KQKWTSEEEEALRRGVLKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                           79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.143160IPR017930Myb domain
SuperFamilySSF466897.62E-15258IPR009057Homeodomain-like
SMARTSM007171.2E-7459IPR001005SANT/Myb domain
PfamPF002492.6E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-14556IPR009057Homeodomain-like
CDDcd116603.73E-20656No hitNo description
SMARTSM005261.9E-8113179IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.3E-12114189IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.61116184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466897.62E-15117152IPR009057Homeodomain-like
PfamPF005383.9E-7120176IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSRDKLR VPRPKAPSSS PSPSPQLLLL SAPNNVAEAS PPEDCEKSPQ DDKTPSPKLY  120
SSMILEALDE LKEPNGSEVA TICNFIEQRH EVQPNFRRLL CAKLRRLIGV NKVEKIDKSY  180
KLTDSYAKRA LAPMKDPSLK KKDSAKSSKA AKGLGQLSPA LDAAEAAAMK VADAEAKSHL  240
ANEHMMEVER IGKMAEETES LLELASELYE RCSRGEALTI LQVAHREF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3756190.0AK375619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3099J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159636.10.0single myb histone 4-like isoform X1
SwissprotQ6WLH41e-115SMH3_MAIZE; Single myb histone 3
TrEMBLA0A3B6EH230.0A0A3B6EH23_WHEAT; Uncharacterized protein
STRINGTraes_3AL_12B53AB09.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-44telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]