PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AL_0F75B411F.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 271aa MW: 29322.9 Da PI: 4.7025

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AL_0F75B411F.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	62.1	1.2e-19	2	73	14	85
NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++i+k++lP + ++++d+++++ ec +efi +++se++d c r+++kti+++ ++ al +lGf++yve++ + Traes_3AL_0F75B411F.2 2 TKIIKEMLPPDVRVARDTQDLLVECCVEFINLLSSESNDVCSRDDKKTIAPEHVIRALQDLGFKEYVEEVYA 73 68******************************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.44E-29	2	120	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.5E-32	2	120	IPR009072	Histone-fold
Pfam	PF00808	1.6E-15	2	59	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MTKIIKEMLP PDVRVARDTQ DLLVECCVEF INLLSSESND VCSRDDKKTI APEHVIRALQ 60 DLGFKEYVEE VYAAYEQHKL ETLDSPKATK FTGIEMTEEE AVAEQQRMFA EARARMNNGA 120 AKPKEPALEP QNQPQQPPQP HLQLHPQAQQ PPQPQPQLHY PQSQQPLQPF TQAPPQQPLH 180 PQLQQYTQAP PQQPLQPPLQ LYPQAQPEQP LQPQSSGSTT GTCVISAAAP SATGTTAAAT 240 SAPAIPAIST AAPSATPADA SAAAATSTPA T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-29	1	113	21	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF464903	0.0	AF464903.1 Triticum aestivum repressor protein (Dr1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235094.1	1e-102	nuclear transcription factor Y subunit beta
TrEMBL	A0A3B6ETC6	0.0	A0A3B6ETC6_WHEAT; Uncharacterized protein
TrEMBL	A0A446P227	0.0	A0A446P227_TRITD; Uncharacterized protein
STRING	Traes_3AL_0F75B411F.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	2e-58	nuclear factor Y, subunit B13

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]